Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   IU367_RS19925 Genome accession   NZ_CP064746
Coordinates   4292456..4293895 (-) Length   479 a.a.
NCBI ID   WP_043140004.1    Uniprot ID   -
Organism   Aeromonas bestiarum strain YK48     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4287456..4298895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IU367_RS19895 (IU367_19780) dagF 4287729..4288469 (+) 741 WP_274452901.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  IU367_RS19900 (IU367_19785) - 4288573..4290477 (+) 1905 WP_274452902.1 BglG family transcription antiterminator -
  IU367_RS19905 (IU367_19790) npr 4290496..4290768 (-) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  IU367_RS19910 (IU367_19795) rapZ 4290789..4291655 (-) 867 WP_043140001.1 RNase adapter RapZ -
  IU367_RS19915 (IU367_19800) ptsN 4291698..4292144 (-) 447 WP_042039095.1 PTS IIA-like nitrogen regulatory protein PtsN -
  IU367_RS19920 (IU367_19805) hpf 4292147..4292434 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  IU367_RS19925 (IU367_19810) rpoN/rpoN1 4292456..4293895 (-) 1440 WP_043140004.1 RNA polymerase factor sigma-54 Machinery gene
  IU367_RS19930 (IU367_19815) lptB 4293961..4294686 (-) 726 WP_042867841.1 LPS export ABC transporter ATP-binding protein -
  IU367_RS19935 (IU367_19820) lptA 4294690..4295217 (-) 528 WP_042867839.1 lipopolysaccharide transport periplasmic protein LptA -
  IU367_RS19940 (IU367_19825) lptC 4295204..4295764 (-) 561 WP_274452903.1 LPS export ABC transporter periplasmic protein LptC -
  IU367_RS19945 (IU367_19830) kdsC 4295761..4296315 (-) 555 WP_241325653.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  IU367_RS19950 (IU367_19835) - 4296315..4297310 (-) 996 WP_043140012.1 KpsF/GutQ family sugar-phosphate isomerase -
  IU367_RS19955 (IU367_19840) mlaF 4297518..4298318 (+) 801 WP_043140015.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53807.73 Da        Isoelectric Point: 4.3416

>NTDB_id=504515 IU367_RS19925 WP_043140004.1 4292456..4293895(-) (rpoN/rpoN1) [Aeromonas bestiarum strain YK48]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDASQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLTEAREVINEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGTKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=504515 IU367_RS19925 WP_043140004.1 4292456..4293895(-) (rpoN/rpoN1) [Aeromonas bestiarum strain YK48]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAACCCCTTGCTGGAGCAAGAGGAGAATGAGG
TGCAGGAGACCAGCCCGGAAGAGCCGGTCGACGCCAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGAGGATGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAAGACAGCGTCTATCAGGGCGAAACCACCGAGAATCTGCAGGACTATCTGCTGTGGCAGATGCGACTCACGCCGTTCA
GCGATCTGGATGCCGCCATAGCCCTCGCCATCATAGATGCCATCGACGACTCCGGTTATCTGACCGTCTCCCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGACGAGGTCGAGGCCGTGCTCAAGCGAGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTACAGGAATGCCTGTTGATCCAGCTCGGTCAATACGCCCCCGAACTGCCCT
GGCTCACCGAGGCCAGAGAGGTGATCAACGAGCACATGGACTTGCTCGGCAATCGCGATTATCGCACCCTGGCGCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTACTGGATCTCATCCAGCAGCTGGAGCCCAGACCGGGCAATGGCATCAT
ACAGAGCGACTCCCAGTACGTGATCCCGGATGTGACCGTGGTCAAGAAGGGTACCAAATGGGTGGTCGAGCTCAATCCCG
ATTCCGCGCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCACGCCAGGCGCGCACCAGCCAGGACACCCAGTTC
ATCCGTTCCCATCTGCAAGAGGCGAAGTGGTTCATCAAGAGCCTGGAGAGTCGCAATGACACCCTGCTCAAGGTGGCCAG
CTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCCATGAAGCCCATGGTGCTCAACGACATCGCCG
AAGCGGTAGAGATGCATGAGTCAACTATCTCCCGGGTAACGACCCAGAAATACATGCATACGCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAATACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCAGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.169

100

0.491