Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HCD_RS00210 Genome accession   NC_017735
Coordinates   41859..42140 (-) Length   93 a.a.
NCBI ID   WP_014658599.1    Uniprot ID   I0EQ51
Organism   Helicobacter cetorum MIT 99-5656     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 36859..47140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCD_RS00195 (HCD_00175) - 37435..38820 (-) 1386 WP_041594796.1 COG3014 family protein -
  HCD_RS00200 (HCD_00180) comB4 39219..41594 (-) 2376 WP_014658597.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HCD_RS00205 (HCD_00185) comB3 41596..41859 (-) 264 WP_014658598.1 hypothetical protein Machinery gene
  HCD_RS00210 (HCD_00190) comB2 41859..42140 (-) 282 WP_014658599.1 TrbC/VirB2 family protein Machinery gene
  HCD_RS00215 (HCD_00195) - 42291..43118 (-) 828 WP_014658600.1 DUF5718 family protein -
  HCD_RS00220 (HCD_00200) - 43212..44264 (-) 1053 WP_014658601.1 MnmA/TRMU family protein -
  HCD_RS00225 (HCD_00205) dnaG 44261..45967 (-) 1707 WP_014658602.1 DNA primase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10642.96 Da        Isoelectric Point: 9.0456

>NTDB_id=50447 HCD_RS00210 WP_014658599.1 41859..42140(-) (comB2) [Helicobacter cetorum MIT 99-5656]
MFAYFLKIIFLIGLCFSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLASWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=50447 HCD_RS00210 WP_014658599.1 41859..42140(-) (comB2) [Helicobacter cetorum MIT 99-5656]
ATGTTTGCTTATTTTTTAAAAATCATCTTTTTAATAGGATTGTGTTTTTCAAGTCTGTTTGCTGAAGGGTTAGAAGGGTT
TTTCAACGCCTTAGAAGCCCAGCTTAAAAGCCCTATAGCTAAGGGAATTTTAATGGTGATTTTTATAGGGATTGCCATTT
ATGTGTGGAGAAATTTAGACAGGTGGAAAGAGATTTTATTCACCATACTTGGTGTGGTGTTTGGAATTTTCTTGTTTTTT
AAAGCCCCTAGTTTAGCAAGCTGGTTTATGGGGATATTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0EQ51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

92.473

100

0.925

Multiple sequence alignment