Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KP952_RS10005 Genome accession   NZ_CP076731
Coordinates   1907484..1908101 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1902484..1913101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS09980 (KP952_09980) yndJ 1902803..1904443 (+) 1641 WP_014479931.1 YndJ family protein -
  KP952_RS09985 (KP952_09985) - 1904533..1904847 (+) 315 Protein_1933 hypothetical protein -
  KP952_RS09990 (KP952_09990) pghL 1905072..1905830 (+) 759 WP_216786781.1 gamma-polyglutamate hydrolase PghL -
  KP952_RS09995 (KP952_09995) - 1905857..1906306 (-) 450 WP_014479935.1 YndM family protein -
  KP952_RS10000 (KP952_10000) fosM 1906515..1906934 (+) 420 WP_014479937.1 FosM family fosfomycin resistance protein -
  KP952_RS21920 - 1906858..1907197 (+) 340 Protein_1937 hypothetical protein -
  KP952_RS10005 (KP952_10005) dinR/lexA 1907484..1908101 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  KP952_RS10010 (KP952_10010) yneA 1908251..1908568 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  KP952_RS10015 (KP952_10015) dinL 1908587..1909240 (+) 654 WP_014479938.1 recombinase family protein -
  KP952_RS10020 (KP952_10020) ynzC 1909304..1909537 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  KP952_RS10025 (KP952_10025) recP/tkt 1909706..1911709 (+) 2004 WP_014476936.1 transketolase Machinery gene
  KP952_RS10030 (KP952_10030) sirA 1911862..1912308 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  KP952_RS10035 (KP952_10035) yneF 1912394..1912612 (+) 219 WP_003221221.1 YneF family protein -
  KP952_RS10040 (KP952_10040) ynzD 1912686..1912859 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=504428 KP952_RS10005 WP_003238209.1 1907484..1908101(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain Miz-8]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=504428 KP952_RS10005 WP_003238209.1 1907484..1908101(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1