Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   KP952_RS09260 Genome accession   NZ_CP076731
Coordinates   1784920..1785351 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779920..1790351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS09240 (KP952_09240) spoVS 1780482..1780742 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  KP952_RS09245 (KP952_09245) tdh 1781007..1782050 (+) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  KP952_RS09250 (KP952_09250) kbl 1782063..1783241 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  KP952_RS09255 (KP952_09255) miaB 1783389..1784918 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KP952_RS09260 (KP952_09260) ymcA 1784920..1785351 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  KP952_RS09265 (KP952_09265) cotE 1785613..1786158 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  KP952_RS09270 (KP952_09270) hexA 1786291..1788867 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=504425 KP952_RS09260 WP_003231834.1 1784920..1785351(+) (ymcA) [Bacillus subtilis subsp. subtilis strain Miz-8]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=504425 KP952_RS09260 WP_003231834.1 1784920..1785351(+) (ymcA) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AACAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAATCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1