Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KP952_RS06900 Genome accession   NZ_CP076731
Coordinates   1328332..1329468 (+) Length   378 a.a.
NCBI ID   WP_216786756.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323332..1334468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS06875 (KP952_06875) yjnA 1324025..1324789 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  KP952_RS06880 (KP952_06880) bstD 1325014..1325478 (-) 465 WP_014479541.1 DinB family protein -
  KP952_RS06885 (KP952_06885) yjoB 1325627..1326727 (+) 1101 Protein_1306 ATPase YjoB -
  KP952_RS06895 (KP952_06895) - 1328014..1328187 (+) 174 Protein_1308 ATPase -
  KP952_RS06900 (KP952_06900) rapC 1328332..1329468 (+) 1137 WP_216786756.1 response regulator aspartate phosphatase RapA Regulator
  KP952_RS06905 (KP952_06905) phrA 1329458..1329592 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  KP952_RS06910 (KP952_06910) yjpA 1329623..1329869 (-) 247 Protein_1311 YciI family protein -
  KP952_RS06915 (KP952_06915) xlyB 1329990..1330943 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  KP952_RS06920 (KP952_06920) yjqA 1330983..1331360 (-) 378 WP_014479546.1 PH domain-containing protein -
  KP952_RS06925 (KP952_06925) pghB 1331465..1332067 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  KP952_RS06930 (KP952_06930) xpdC 1332144..1332980 (+) 837 WP_003245071.1 manganese catalase family protein -
  KP952_RS06935 (KP952_06935) xkdA 1333024..1333620 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  KP952_RS06940 (KP952_06940) xre 1333783..1334124 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45020.19 Da        Isoelectric Point: 4.7691

>NTDB_id=504403 KP952_RS06900 WP_216786756.1 1328332..1329468(+) (rapC) [Bacillus subtilis subsp. subtilis strain Miz-8]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFHNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=504403 KP952_RS06900 WP_216786756.1 1328332..1329468(+) (rapC) [Bacillus subtilis subsp. subtilis strain Miz-8]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTCACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415