Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPB14_RS07035 | Genome accession | NC_017733 |
| Coordinates | 1454079..1454654 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203619.1 | Uniprot ID | - |
| Organism | Helicobacter pylori HUP-B14 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1449079..1459654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB14_RS08495 | - | 1450743..1451330 (-) | 588 | WP_049789616.1 | restriction endonuclease subunit S | - |
| HPB14_RS08500 | - | 1451327..1452010 (-) | 684 | WP_041199454.1 | restriction endonuclease subunit S | - |
| HPB14_RS07030 (HPB14_07075) | - | 1452007..1454046 (-) | 2040 | WP_001147687.1 | class I SAM-dependent DNA methyltransferase | - |
| HPB14_RS07035 (HPB14_07080) | comFC | 1454079..1454654 (-) | 576 | WP_001203619.1 | ComF family protein | Machinery gene |
| HPB14_RS07040 (HPB14_07085) | tmk | 1454642..1455217 (-) | 576 | WP_000289699.1 | dTMP kinase | - |
| HPB14_RS07045 (HPB14_07090) | coaD | 1455219..1455692 (-) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| HPB14_RS07050 (HPB14_07095) | - | 1455692..1456255 (-) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| HPB14_RS07055 (HPB14_07105) | flgA | 1456265..1456921 (-) | 657 | WP_000699047.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPB14_RS07060 (HPB14_07110) | uvrD | 1456918..1458963 (-) | 2046 | WP_014658546.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21389.97 Da Isoelectric Point: 8.6920
>NTDB_id=50439 HPB14_RS07035 WP_001203619.1 1454079..1454654(-) (comFC) [Helicobacter pylori HUP-B14]
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNTPLHGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRMNNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKHLKTLNIKTHFAIVLCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNTPLHGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRMNNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKHLKTLNIKTHFAIVLCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=50439 HPB14_RS07035 WP_001203619.1 1454079..1454654(-) (comFC) [Helicobacter pylori HUP-B14]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTCATGGCATCGCCATTGATGATAAAATCAAATCCTTTTATTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATGAACAACCCACGGGATTTCACCTTTAAAGGCGATGAAAGTTTAGATTATTTTTTGTTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGTGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTCATGGCATCGCCATTGATGATAAAATCAAATCCTTTTATTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATGAACAACCCACGGGATTTCACCTTTAAAGGCGATGAAAGTTTAGATTATTTTTTGTTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGTGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |