Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KP952_RS03790 Genome accession   NZ_CP076731
Coordinates   739800..740930 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 734800..745930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS03770 (KP952_03770) - 735139..735336 (-) 198 WP_003240078.1 hypothetical protein -
  KP952_RS03775 (KP952_03775) - 735935..736408 (-) 474 WP_014479086.1 immunity protein YezG family protein -
  KP952_RS03780 (KP952_03780) yeeF 736413..738422 (-) 2010 WP_216786747.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  KP952_RS03785 (KP952_03785) - 738634..739655 (+) 1022 Protein_699 hypothetical protein -
  KP952_RS03790 (KP952_03790) rapC 739800..740930 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  KP952_RS03795 (KP952_03795) phrH 740920..741093 (+) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  KP952_RS03800 (KP952_03800) yeeI 741253..741972 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KP952_RS03805 (KP952_03805) - 742244..742723 (+) 480 WP_413227499.1 spore coat protein -
  KP952_RS03810 (KP952_03810) yezE 742838..743422 (+) 585 WP_046380840.1 TetR/AcrR family transcriptional regulator -
  KP952_RS03815 (KP952_03815) cotJA 743599..743847 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  KP952_RS03820 (KP952_03820) cotJB 743831..744094 (+) 264 WP_003219491.1 spore coat protein CotJB -
  KP952_RS03825 (KP952_03825) cotJC 744109..744678 (+) 570 WP_014479096.1 spore coat protein CotJC -
  KP952_RS03830 (KP952_03830) yesJ 744803..745345 (+) 543 WP_046380843.1 GNAT family N-acetyltransferase -
  KP952_RS03835 (KP952_03835) yesK 745368..745669 (+) 302 Protein_709 YesK-like family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=504377 KP952_RS03790 WP_014479091.1 739800..740930(+) (rapC) [Bacillus subtilis subsp. subtilis strain Miz-8]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=504377 KP952_RS03790 WP_014479091.1 739800..740930(+) (rapC) [Bacillus subtilis subsp. subtilis strain Miz-8]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCAGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402