Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KP952_RS02395 Genome accession   NZ_CP076731
Coordinates   473848..474282 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 468848..479282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS02365 (KP952_02365) ydaD 469495..470355 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  KP952_RS02370 (KP952_02370) lyxE 470371..470874 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  KP952_RS02375 (KP952_02375) ydaF 470962..471513 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  KP952_RS02380 (KP952_02380) ydaG 471591..472013 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  KP952_RS02385 (KP952_02385) amj 472519..473328 (+) 810 WP_014478868.1 lipid II flippase Amj -
  KP952_RS02390 (KP952_02390) ydzA 473373..473663 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  KP952_RS02395 (KP952_02395) lrpC 473848..474282 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  KP952_RS02400 (KP952_02400) topB 474347..476530 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  KP952_RS02405 (KP952_02405) mutT 476642..477091 (+) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  KP952_RS02410 (KP952_02410) poxB 477158..478882 (+) 1725 WP_014478872.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=504374 KP952_RS02395 WP_003246585.1 473848..474282(+) (lrpC) [Bacillus subtilis subsp. subtilis strain Miz-8]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=504374 KP952_RS02395 WP_003246585.1 473848..474282(+) (lrpC) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1