Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   KP952_RS00330 Genome accession   NZ_CP076731
Coordinates   59992..60222 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54992..65222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS00300 (KP952_00300) ridA 55156..55533 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  KP952_RS00305 (KP952_00305) spoVG 55728..56021 (+) 294 WP_003218346.1 septation regulator SpoVG -
  KP952_RS00310 (KP952_00310) glmU 56214..57584 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KP952_RS00315 (KP952_00315) prsS 57607..58560 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  KP952_RS00320 (KP952_00320) rplYB 58645..59259 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  KP952_RS00325 (KP952_00325) pth 59366..59932 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  KP952_RS00330 (KP952_00330) subA/fin 59992..60222 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  KP952_RS00335 (KP952_00335) mfd 60292..63825 (+) 3534 WP_213783528.1 transcription-repair coupling factor -
  KP952_RS00340 (KP952_00340) spoVT 63961..64497 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=504359 KP952_RS00330 WP_003243417.1 59992..60222(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain Miz-8]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=504359 KP952_RS00330 WP_003243417.1 59992..60222(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1