Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KQ220_RS20590 Genome accession   NZ_CP076709
Coordinates   4281647..4282639 (+) Length   330 a.a.
NCBI ID   WP_000224477.1    Uniprot ID   -
Organism   Escherichia coli O158:H23 strain CFIAFB20140388     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4276647..4287639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ220_RS20565 (KQ220_20560) rbsD 4276771..4277190 (+) 420 WP_001318146.1 D-ribose pyranase -
  KQ220_RS20570 (KQ220_20565) rbsA 4277198..4278703 (+) 1506 WP_216781264.1 ribose ABC transporter ATP-binding protein RbsA -
  KQ220_RS20575 (KQ220_20570) rbsC 4278708..4279673 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  KQ220_RS20580 (KQ220_20575) rbsB 4279698..4280588 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KQ220_RS20585 (KQ220_20580) rbsK 4280714..4281643 (+) 930 WP_001551941.1 ribokinase -
  KQ220_RS20590 (KQ220_20585) cytR 4281647..4282639 (+) 993 WP_000224477.1 ribose operon transcriptional repressor RbsR Regulator
  KQ220_RS20595 (KQ220_20590) mdtD 4282605..4284032 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  KQ220_RS20600 (KQ220_20595) yieP 4284055..4284747 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.93 Da        Isoelectric Point: 5.2141

>NTDB_id=504340 KQ220_RS20590 WP_000224477.1 4281647..4282639(+) (cytR) [Escherichia coli O158:H23 strain CFIAFB20140388]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRTAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=504340 KQ220_RS20590 WP_000224477.1 4281647..4282639(+) (cytR) [Escherichia coli O158:H23 strain CFIAFB20140388]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGACGGCGATGAAACGTGCGGGCCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACACCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364