Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KQ220_RS11200 Genome accession   NZ_CP076709
Coordinates   2299799..2301226 (+) Length   475 a.a.
NCBI ID   WP_112005158.1    Uniprot ID   -
Organism   Escherichia coli O158:H23 strain CFIAFB20140388     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294799..2306226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ220_RS11170 (KQ220_11170) - 2295339..2295674 (-) 336 WP_059340914.1 hypothetical protein -
  KQ220_RS11175 (KQ220_11175) - 2295677..2295973 (+) 297 Protein_2199 EutP/PduV family microcompartment system protein -
  KQ220_RS11180 (KQ220_11180) tmaR 2296074..2296403 (-) 330 WP_000450409.1 DUF496 family protein -
  KQ220_RS11185 (KQ220_11185) yeeA 2296575..2297633 (-) 1059 WP_001200888.1 FUSC family protein -
  KQ220_RS11190 (KQ220_11190) sbmC 2297832..2298305 (-) 474 WP_001602831.1 DNA gyrase inhibitor SbmC -
  KQ220_RS11195 (KQ220_11195) dacD 2298424..2299590 (-) 1167 WP_105447826.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KQ220_RS11200 (KQ220_11200) sbcB 2299799..2301226 (+) 1428 WP_112005158.1 exodeoxyribonuclease I Machinery gene
  KQ220_RS11205 (KQ220_11205) tsuB 2301269..2301496 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KQ220_RS11210 (KQ220_11210) tsuA 2301510..2302568 (-) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  KQ220_RS11215 (KQ220_11215) plaP 2302747..2304105 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KQ220_RS11220 (KQ220_11220) yoeI 2304095..2304157 (-) 63 WP_010723108.1 membrane protein YoeI -
  KQ220_RS11225 (KQ220_11225) yeeY 2304372..2305301 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KQ220_RS11230 (KQ220_11230) yeeZ 2305347..2306171 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.3498

>NTDB_id=504303 KQ220_RS11200 WP_112005158.1 2299799..2301226(+) (sbcB) [Escherichia coli O158:H23 strain CFIAFB20140388]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=504303 KQ220_RS11200 WP_112005158.1 2299799..2301226(+) (sbcB) [Escherichia coli O158:H23 strain CFIAFB20140388]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581