Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KQ217_RS13245 Genome accession   NZ_CP076706
Coordinates   2720559..2721551 (+) Length   330 a.a.
NCBI ID   WP_064751669.1    Uniprot ID   -
Organism   Escherichia coli O170:H18 strain CFIAFB20120266     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2715559..2726551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ217_RS13220 (KQ217_13220) rbsD 2715683..2716102 (+) 420 WP_001314250.1 D-ribose pyranase -
  KQ217_RS13225 (KQ217_13225) rbsA 2716110..2717615 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  KQ217_RS13230 (KQ217_13230) rbsC 2717620..2718585 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  KQ217_RS13235 (KQ217_13235) rbsB 2718610..2719500 (+) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  KQ217_RS13240 (KQ217_13240) rbsK 2719626..2720555 (+) 930 WP_001361088.1 ribokinase -
  KQ217_RS13245 (KQ217_13245) cytR 2720559..2721551 (+) 993 WP_064751669.1 ribose operon transcriptional repressor RbsR Regulator
  KQ217_RS13250 (KQ217_13250) mdtD 2721517..2722944 (-) 1428 WP_001280828.1 multidrug transporter subunit MdtD -
  KQ217_RS13255 (KQ217_13255) yieP 2722967..2723659 (-) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36592.86 Da        Isoelectric Point: 5.2059

>NTDB_id=504237 KQ217_RS13245 WP_064751669.1 2720559..2721551(+) (cytR) [Escherichia coli O170:H18 strain CFIAFB20120266]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLHPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=504237 KQ217_RS13245 WP_064751669.1 2720559..2721551(+) (cytR) [Escherichia coli O170:H18 strain CFIAFB20120266]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCATCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364