Detailed information NTG0504212

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KQ217_RS07995
• Genome accession: NZ_CP076706
• Coordinates: 1619222..1620214 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O170:H18 strain CFIAFB20120266
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1614222..1625214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ217_RS07975 (KQ217_07975)	ygbM	1614853..1615629 (+)	777	WP_001136911.1	HPr family phosphocarrier protein	-
KQ217_RS07980 (KQ217_07980)	ygbN	1615718..1617082 (+)	1365	WP_000104433.1	GntP family transporter	-
KQ217_RS07985 (KQ217_07985)	-	1617225..1618268 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
KQ217_RS07990 (KQ217_07990)	-	1618493..1619044 (+)	552	WP_001179442.1	flavodoxin family protein	-
KQ217_RS07995 (KQ217_07995)	rpoS	1619222..1620214 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KQ217_RS08000 (KQ217_08000)	nlpD	1620277..1621371 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KQ217_RS08005 (KQ217_08005)	pcm	1621556..1622182 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
KQ217_RS08010 (KQ217_08010)	surE	1622176..1622937 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KQ217_RS08015 (KQ217_08015)	truD	1622918..1623967 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
KQ217_RS08020 (KQ217_08020)	ispF	1623964..1624443 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KQ217_RS08025 (KQ217_08025)	ispD	1624443..1625153 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=504212 KQ217_RS07995 WP_000081550.1 1619222..1620214(-) (rpoS) [Escherichia coli O170:H18 strain CFIAFB20120266]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=504212 KQ217_RS07995 WP_000081550.1 1619222..1620214(-) (rpoS) [Escherichia coli O170:H18 strain CFIAFB20120266]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715