Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KQ217_RS04430 Genome accession   NZ_CP076706
Coordinates   853058..854485 (+) Length   475 a.a.
NCBI ID   WP_072972260.1    Uniprot ID   -
Organism   Escherichia coli O170:H18 strain CFIAFB20120266     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 848058..859485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ217_RS04400 (KQ217_04400) pduU 848436..848786 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  KQ217_RS04405 (KQ217_04405) - 848791..849234 (+) 444 WP_001189435.1 EutP/PduV family microcompartment system protein -
  KQ217_RS04410 (KQ217_04410) tmaR 849334..849663 (-) 330 WP_000450409.1 DUF496 family protein -
  KQ217_RS04415 (KQ217_04415) yeeA 849835..850893 (-) 1059 WP_001200890.1 FUSC family protein -
  KQ217_RS04420 (KQ217_04420) sbmC 851091..851564 (-) 474 WP_216803733.1 DNA gyrase inhibitor SbmC -
  KQ217_RS04425 (KQ217_04425) dacD 851683..852849 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KQ217_RS04430 (KQ217_04430) sbcB 853058..854485 (+) 1428 WP_072972260.1 exodeoxyribonuclease I Machinery gene
  KQ217_RS04435 (KQ217_04435) plaP 854559..855917 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KQ217_RS04440 (KQ217_04440) yoeI 855907..855969 (-) 63 WP_010723108.1 membrane protein YoeI -
  KQ217_RS04445 (KQ217_04445) yeeY 856184..857113 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  KQ217_RS04450 (KQ217_04450) yeeZ 857159..857983 (-) 825 WP_021524296.1 SDR family oxidoreductase -
  KQ217_RS04455 (KQ217_04455) yoeB 858066..858320 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  KQ217_RS04460 (KQ217_04460) yefM 858317..858568 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  KQ217_RS04465 (KQ217_04465) hisL 858851..858901 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54469.76 Da        Isoelectric Point: 5.4720

>NTDB_id=504199 KQ217_RS04430 WP_072972260.1 853058..854485(+) (sbcB) [Escherichia coli O170:H18 strain CFIAFB20120266]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=504199 KQ217_RS04430 WP_072972260.1 853058..854485(+) (sbcB) [Escherichia coli O170:H18 strain CFIAFB20120266]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACTGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCTCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACTCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCACAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581