Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IVP17_RS14365 Genome accession   NZ_CP064663
Coordinates   2922724..2923329 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella sp. SJTUF14170     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2917724..2928329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVP17_RS14350 (IVP17_14350) helD 2917941..2919995 (-) 2055 WP_023227213.1 DNA helicase IV -
  IVP17_RS14355 (IVP17_14355) - 2920119..2920565 (+) 447 WP_001261222.1 YccF domain-containing protein -
  IVP17_RS14360 (IVP17_14360) yccS 2920584..2922737 (+) 2154 WP_000950876.1 YccS family putative transporter -
  IVP17_RS14365 (IVP17_14365) sxy/tfoX 2922724..2923329 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  IVP17_RS14370 (IVP17_14370) sulA 2923546..2924055 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  IVP17_RS14375 (IVP17_14375) ompA 2924412..2925464 (+) 1053 WP_001670727.1 porin OmpA -
  IVP17_RS14380 (IVP17_14380) matP 2925536..2925988 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  IVP17_RS14385 (IVP17_14385) - 2926174..2927934 (+) 1761 WP_023227214.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=504135 IVP17_RS14365 WP_001202375.1 2922724..2923329(-) (sxy/tfoX) [Salmonella sp. SJTUF14170]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=504135 IVP17_RS14365 WP_001202375.1 2922724..2923329(-) (sxy/tfoX) [Salmonella sp. SJTUF14170]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACTGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751