Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KRG72_RS07810 Genome accession   NZ_CP076703
Coordinates   1568343..1571168 (-) Length   941 a.a.
NCBI ID   WP_258250417.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1563343..1576168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS07775 (KRG72_07785) - 1563396..1563785 (-) 390 WP_014335250.1 Asp23/Gls24 family envelope stress response protein -
  KRG72_RS07780 (KRG72_07790) efp 1563865..1564425 (-) 561 WP_074560860.1 elongation factor P -
  KRG72_RS07785 (KRG72_07795) - 1564609..1564923 (+) 315 WP_258250413.1 hypothetical protein -
  KRG72_RS07790 (KRG72_07800) - 1564962..1565426 (-) 465 WP_006531991.1 deaminase -
  KRG72_RS07795 (KRG72_07805) - 1565419..1565769 (-) 351 WP_258250414.1 hypothetical protein -
  KRG72_RS07800 (KRG72_07810) - 1565780..1566841 (-) 1062 WP_258250415.1 Xaa-Pro peptidase family protein -
  KRG72_RS07805 (KRG72_07815) - 1566976..1568235 (-) 1260 WP_258250416.1 MATE family efflux transporter -
  KRG72_RS07810 (KRG72_07820) uvrA 1568343..1571168 (-) 2826 WP_258250417.1 excinuclease ABC subunit UvrA Machinery gene
  KRG72_RS07815 (KRG72_07825) - 1571464..1572408 (+) 945 WP_020917419.1 magnesium transporter CorA family protein -
  KRG72_RS07820 (KRG72_07830) - 1572644..1573300 (+) 657 WP_074602836.1 DUF1129 domain-containing protein -
  KRG72_RS07825 (KRG72_07835) - 1573345..1573791 (-) 447 WP_258250418.1 hypothetical protein -
  KRG72_RS07830 (KRG72_07840) - 1573775..1573999 (-) 225 WP_043895293.1 helix-turn-helix transcriptional regulator -
  KRG72_RS07835 (KRG72_07845) - 1574001..1574525 (-) 525 WP_258250419.1 heme biosynthesis HemY N-terminal domain-containing protein -
  KRG72_RS07840 (KRG72_07850) rpsR 1574673..1574912 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  KRG72_RS07845 (KRG72_07855) ssb 1574973..1575479 (-) 507 WP_039696324.1 single-stranded DNA-binding protein Machinery gene
  KRG72_RS07850 (KRG72_07860) rpsF 1575491..1575781 (-) 291 WP_006531977.1 30S ribosomal protein S6 -
  KRG72_RS07855 (KRG72_07865) - 1575987..1576133 (-) 147 WP_228380491.1 ATP-dependent protease -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 104048.28 Da        Isoelectric Point: 6.1220

>NTDB_id=504089 KRG72_RS07810 WP_258250417.1 1568343..1571168(-) (uvrA) [Streptococcus equinus strain S1]
MQDKLIIRGARAHNLKNVNVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARMFLGNMEKPDVDSIEGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVDKVLELPERTRMQILAPVVRRKK
GQHKTIFDRIQKDGYVRVRVDGDIFDISEVPELSKSKMHNIEIVVDRLINKEGIRSRLFDSVEAALRLADGYVIIDTMDG
NELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDLDLVIPDRSKTLREGALAPWNPISSNYYPAML
EQAMEAFGVDMDTPFEDLSEEEQNLVLYGSGEREFHFHYVNDFGGERNIDLPFEGVVNNINRRYHETNSDFTRNVMRGYM
NELPCPTCHGYRLNNQALCVRVGGENGLNIGQVSDLSVADHLELLNHLELSENEKTIATPIVKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNTLIVVEHDEDTMRQADWLI
DVGPGAGEFGGQIVASGTPEEVAKNKKSITGQYLSGAKEIPVPLERRKGNGRFLRVLGASENNLQNIDVTFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLNRNSAKPGKHKALEGIENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKDKNIAEILDMTVNDAVEFF
APIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADYIIDLGPEGGVGGGQIIATGTPEEVAKVKESFTGQYLKDKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=504089 KRG72_RS07810 WP_258250417.1 1568343..1571168(-) (uvrA) [Streptococcus equinus strain S1]
ATGCAAGATAAATTAATTATTCGTGGGGCTCGAGCCCACAATTTAAAAAATGTCAATGTTGAGATTCCGCGGGATAAATT
AGTTGTTGTGACTGGTTTATCTGGGTCTGGAAAATCAAGTTTGGCATTTGATACGATTTACGCAGAAGGGCAACGTCGTT
ACGTTGAAAGCTTGTCTGCTTATGCCCGCATGTTTCTTGGTAATATGGAAAAACCAGATGTGGATTCGATTGAAGGTCTT
AGCCCAGCGATTTCCATTGACCAAAAAACAACAAGTAAAAATCCGCGCTCTACTGTAGGAACAACGACAGAAATCAATGA
TTATCTGCGCCTTTTGTACGCTCGTGTGGGGACGCCTTACTGTATTAATGGGCACGGTGCTATTACGGCATCATCTGTTG
AACAGATTGTTGATAAGGTATTGGAATTGCCTGAGCGCACAAGAATGCAAATTTTAGCGCCTGTTGTGCGTCGCAAAAAA
GGTCAACACAAGACGATTTTTGATCGCATTCAAAAAGATGGTTATGTACGTGTACGCGTGGATGGTGACATTTTTGATAT
TTCAGAAGTTCCTGAGTTATCTAAGAGTAAAATGCACAACATCGAGATTGTCGTGGACCGTTTGATTAATAAAGAGGGCA
TTCGTTCACGTCTTTTTGATTCTGTGGAAGCAGCCCTTCGTTTGGCAGATGGTTATGTCATCATCGATACCATGGATGGC
AATGAATTGCTTTTCTCAGAACATTATTCATGTCCGGTTTGTGGATTTACCGTTCCTGAATTGGAACCGCGTCTGTTCTC
GTTTAATGCGCCGTTTGGCTCATGTCCAACTTGTGATGGCTTGGGAAATAAATTAGAAGTTGACTTAGATTTGGTTATTC
CAGACCGTAGCAAAACGCTTCGTGAAGGGGCTTTAGCACCATGGAATCCTATTTCATCAAATTATTATCCAGCTATGCTT
GAGCAAGCCATGGAAGCTTTTGGTGTTGATATGGATACACCTTTTGAAGACTTGAGCGAAGAAGAGCAAAATCTTGTCCT
TTATGGTTCAGGTGAGCGTGAATTCCATTTCCACTATGTCAATGATTTTGGTGGTGAACGCAATATTGACCTTCCGTTTG
AAGGGGTGGTTAATAACATTAATCGTCGTTACCATGAGACAAATAGTGATTTTACCCGCAATGTTATGCGTGGTTACATG
AACGAGTTGCCATGTCCGACATGTCACGGCTATCGTTTGAATAATCAAGCACTCTGCGTTCGTGTGGGTGGTGAAAATGG
TTTGAATATTGGGCAAGTGTCTGATTTGTCAGTTGCTGACCATTTGGAACTCTTGAATCACTTGGAGCTTTCTGAGAATG
AAAAAACTATCGCTACACCGATTGTTAAGGAAATCAAAGACCGTTTGACTTTCCTTAACAATGTTGGCTTGAATTACTTG
ACTTTATCACGTTCTGCGGGTACTTTGTCAGGTGGTGAAAGTCAGCGTATTCGCTTGGCGACACAAATTGGTTCAAACTT
GTCTGGCGTCCTTTATATCCTTGATGAACCGTCGATTGGTCTTCATCAACGTGATAATGATCGCTTGATTGATAGCTTGA
AGAAAATGCGTGATCTCGGAAATACCTTAATTGTCGTTGAACACGACGAAGACACTATGCGTCAAGCTGATTGGTTGATT
GATGTCGGACCAGGAGCTGGTGAATTTGGTGGGCAAATTGTCGCTTCAGGAACACCAGAAGAAGTTGCTAAGAACAAGAA
ATCAATCACAGGTCAATATCTATCAGGTGCCAAAGAAATTCCTGTGCCACTAGAACGTCGTAAAGGTAATGGACGTTTTC
TTCGCGTACTAGGAGCTTCAGAAAATAACCTGCAAAATATCGACGTGACTTTCCCGCTTGGTAAATTCATTGCAGTCACA
GGTGTGTCTGGTTCTGGTAAATCAACTTTGGTTAACAGTATTTTGAAAAAAGCTGTTGCTCAAAAATTAAATCGCAATTC
TGCTAAACCTGGTAAGCACAAAGCACTTGAAGGTATTGAAAACATTGAACGCTTGATTGATATTGACCAAAGCCCAATCG
GTCGTACACCGCGTTCAAATCCTGCAACTTATACAGGTGTCTTTGATGATATTCGTGACCTTTTTGCTAAGACCAATGAA
GCTAAGATTCGTGGTTACAAAAAAGGACGTTTCTCATTTAACGTCAAAGGTGGACGTTGTGAGGCTTGCTCAGGTGATGG
TATTATCAAGATTGAGATGCACTTCTTGCCAGATGTTTACGTGCCTTGCGAGGTTTGCCACGGTACACGTTATAATAGTG
AAACGCTTGAAGTTCATTACAAAGACAAAAATATCGCTGAAATCCTTGATATGACAGTCAACGATGCGGTTGAATTCTTT
GCACCAATCCCTAAAATCGCACGCAAATTGCAAACTATCAAAGACGTTGGACTTGGTTATGTCACACTTGGACAACCTGC
AACAACCCTTTCTGGTGGTGAAGCACAGCGTATGAAATTGGCTAGTGAACTTCACAAACGCTCAACTGGTAAGAGTCTTT
ATATCCTTGATGAACCAACGACAGGTCTTCACACAGATGATATTGCTCGTCTGCTTAAAGTCCTTCAACGTTTTGTGGAT
GACGGTAATACTGTGCTTGTCATTGAACACAATCTTGATGTGATTAAGACAGCTGACTATATTATCGACCTTGGACCAGA
AGGCGGTGTCGGCGGTGGACAAATCATCGCTACAGGCACACCAGAAGAAGTCGCCAAAGTCAAAGAATCCTTCACAGGAC
AATATCTAAAAGATAAATTGAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85

99.894

0.849
  uvrA Streptococcus pneumoniae TIGR4

85

99.894

0.849
  uvrA Streptococcus pneumoniae D39

85

99.894

0.849