Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IT786_RS07880 Genome accession   NZ_CP064656
Coordinates   1644209..1644835 (+) Length   208 a.a.
NCBI ID   WP_195206405.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 3804     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639209..1649835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT786_RS07860 (IT786_07860) - 1639608..1641368 (-) 1761 WP_003858160.1 Lon protease family protein -
  IT786_RS07865 (IT786_07865) matP 1641555..1642007 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  IT786_RS07870 (IT786_07870) ompA 1642073..1643125 (-) 1053 WP_003858156.1 porin OmpA -
  IT786_RS07875 (IT786_07875) sulA 1643482..1643991 (-) 510 WP_003858155.1 SOS-induced cell division inhibitor SulA -
  IT786_RS07880 (IT786_07880) sxy/tfoX 1644209..1644835 (+) 627 WP_195206405.1 TfoX/Sxy family DNA transformation protein Regulator
  IT786_RS07885 (IT786_07885) yccS 1644792..1646954 (-) 2163 WP_003858151.1 YccS family putative transporter -
  IT786_RS07890 (IT786_07890) - 1646973..1647419 (-) 447 WP_003858149.1 YccF domain-containing protein -
  IT786_RS07895 (IT786_07895) helD 1647542..1649596 (+) 2055 WP_058652299.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24032.60 Da        Isoelectric Point: 9.4592

>NTDB_id=504081 IT786_RS07880 WP_195206405.1 1644209..1644835(+) (sxy/tfoX) [Enterobacter hormaechei strain 3804]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMETGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=504081 IT786_RS07880 WP_195206405.1 1644209..1644835(+) (sxy/tfoX) [Enterobacter hormaechei strain 3804]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGACGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572