Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KRG72_RS05435 Genome accession   NZ_CP076703
Coordinates   1081050..1082819 (-) Length   589 a.a.
NCBI ID   WP_258250165.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076050..1087819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS05405 (KRG72_05410) gdhA 1076317..1077666 (-) 1350 WP_039696755.1 NADP-specific glutamate dehydrogenase -
  KRG72_RS05410 (KRG72_05415) - 1077902..1078399 (+) 498 WP_258250161.1 DUF308 domain-containing protein -
  KRG72_RS05415 (KRG72_05420) queF 1078436..1078927 (-) 492 WP_039696752.1 preQ(1) synthase -
  KRG72_RS05420 (KRG72_05425) queE 1079076..1079789 (-) 714 WP_258250162.1 7-carboxy-7-deazaguanine synthase QueE -
  KRG72_RS05425 (KRG72_05430) queD 1079782..1080228 (-) 447 WP_258250163.1 6-carboxytetrahydropterin synthase QueD -
  KRG72_RS05430 (KRG72_05435) queC 1080228..1080878 (-) 651 WP_258250164.1 7-cyano-7-deazaguanine synthase QueC -
  KRG72_RS05435 (KRG72_05440) rcrQ 1081050..1082819 (-) 1770 WP_258250165.1 ABC transporter ATP-binding protein Regulator
  KRG72_RS05440 (KRG72_05445) rcrP 1082822..1084561 (-) 1740 WP_258250166.1 ABC transporter ATP-binding protein Regulator
  KRG72_RS05445 (KRG72_05450) - 1084609..1086477 (-) 1869 WP_258250167.1 ABC-F family ATP-binding cassette domain-containing protein -
  KRG72_RS05450 (KRG72_05455) - 1086474..1087679 (-) 1206 WP_258250168.1 CCA tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65969.11 Da        Isoelectric Point: 5.5423

>NTDB_id=504071 KRG72_RS05435 WP_258250165.1 1081050..1082819(-) (rcrQ) [Streptococcus equinus strain S1]
MSKRNVFLRLWDYLRQYKGALFLAIFLKIFSSVMSVLEPFVLGLAITELTSNLLDMARGVAGAHINVSYIAIILVLYFVR
GMGYELSSYGSNFFITKAVQKTIHDLRRDLSEKINKIPVSYFDSQQFGNVLGRFTSDVETVSNALQQSFLRIIEAVTTIT
LVICMVLYLNWRLALVVIAIIPLTYFSAKFILGKSQPYFKKQADALGDMNGFVQENLTGFNVIKLYGREEISSEEFRDIT
QNLQEVGFKASFISGIMMPVLSAISDMAYLIIAVLGALQVLSGQLTVGNMQAFVQYVWQVSQPVQTITQLASVLQSAKSS
LDRIFEVLDEPAEVSEVTEHLDHDLTGQVSFENVSFQYSADKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTDGSIKIDGHDIRNLSRQEYRKQFGMVLQDAWLYEASIKENLRFGNLKASDDEIVAAAKAANVDHFIRTLPGGYNMEMN
QESSNVSLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMEKLMEGRTSFVIAHRLSTIQDADKILVLNNGQ
IVEQGNHESLLEAKGFYYDLYNSQFAKNN

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=504071 KRG72_RS05435 WP_258250165.1 1081050..1082819(-) (rcrQ) [Streptococcus equinus strain S1]
ATGTCAAAACGAAATGTTTTTCTACGTTTATGGGATTATCTCCGACAATATAAAGGAGCGCTTTTCTTAGCTATTTTTCT
AAAAATCTTTAGCAGTGTCATGAGTGTTCTTGAGCCTTTTGTCCTAGGGCTTGCAATCACAGAATTGACCTCAAATCTTT
TAGATATGGCTCGTGGTGTAGCTGGTGCTCATATTAATGTTTCATACATTGCTATTATTTTGGTGCTTTATTTTGTGCGT
GGAATGGGCTATGAGTTGAGTAGTTATGGTTCAAACTTCTTCATCACAAAAGCGGTACAAAAGACTATTCATGATTTGCG
TCGTGATTTGAGTGAAAAGATTAATAAGATTCCAGTTTCTTATTTTGATAGTCAACAATTTGGTAATGTTTTGGGACGTT
TTACGTCAGATGTGGAAACAGTATCAAATGCTCTTCAACAAAGTTTCCTTCGAATCATTGAAGCAGTCACAACGATTACT
TTAGTTATCTGCATGGTGCTTTATCTTAATTGGCGCTTGGCTTTGGTAGTGATTGCGATTATTCCATTGACCTATTTTAG
TGCCAAATTTATTCTTGGTAAATCACAGCCATATTTCAAAAAACAAGCAGATGCGCTTGGTGATATGAATGGTTTTGTTC
AAGAAAATTTAACAGGATTTAACGTTATTAAGCTTTATGGACGTGAAGAAATTTCAAGTGAAGAATTTCGTGACATCACT
CAGAATTTACAAGAAGTAGGGTTTAAAGCGAGCTTTATTTCTGGGATTATGATGCCAGTTCTTAGTGCTATCTCAGATAT
GGCATACTTGATCATTGCTGTTTTGGGGGCATTGCAGGTTTTGTCGGGCCAATTAACAGTTGGTAATATGCAAGCTTTTG
TACAATACGTATGGCAAGTTAGCCAGCCAGTTCAAACCATCACTCAATTGGCTAGTGTTCTCCAAAGTGCTAAGTCATCA
CTTGATCGTATTTTTGAAGTGCTTGATGAACCAGCTGAAGTTTCTGAAGTGACAGAACACCTAGATCATGATTTAACGGG
GCAAGTTAGCTTTGAAAATGTATCTTTCCAATATTCAGCGGATAAACCATTAATTCGCAACTTTAATTTGGAGGTTAAGC
CGGGTGAAATGGTTGCAATCGTTGGACCAACTGGTGCTGGTAAGACAACATTGATCAACCTTTTGATGCGATTCTATGAT
GTGACTGATGGCTCGATTAAGATTGATGGACATGATATCCGTAACTTGTCACGTCAAGAATACCGTAAACAATTTGGAAT
GGTTTTACAAGATGCTTGGCTTTATGAAGCAAGTATCAAAGAAAATCTTCGTTTTGGTAATCTAAAAGCTAGTGATGATG
AGATTGTAGCAGCAGCCAAAGCAGCAAATGTTGATCACTTTATTCGTACCCTTCCTGGTGGATACAATATGGAAATGAAT
CAAGAATCAAGTAATGTCTCACTTGGTCAAAAACAACTCTTGACCATTGCACGTGCTTTGTTAGCTGATCCTAAGATCTT
GATTTTGGATGAAGCAACTTCATCCGTTGATACACGTCTAGAACTCTTGATTCAAAAGGCTATGGAGAAATTGATGGAAG
GCCGCACAAGCTTTGTCATTGCTCACCGTCTATCAACTATTCAAGATGCTGATAAGATTCTTGTGCTTAATAACGGACAA
ATTGTTGAACAAGGTAACCATGAAAGTCTTTTAGAGGCTAAAGGTTTCTATTACGACCTATACAACAGTCAATTTGCTAA
AAATAATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.294

100

0.433