Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SCRE_RS04380 Genome accession   NC_022236
Coordinates   876871..877941 (+) Length   356 a.a.
NCBI ID   WP_006267924.1    Uniprot ID   F9P657
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 871871..882941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS04360 (SCRE_0858) guaA 872214..873773 (-) 1560 WP_006267821.1 glutamine-hydrolyzing GMP synthase -
  SCRE_RS04365 (SCRE_0859) - 873915..874613 (+) 699 WP_020997788.1 GntR family transcriptional regulator -
  SCRE_RS04370 (SCRE_0860) - 874729..875061 (+) 333 WP_006267894.1 putative DNA-binding protein -
  SCRE_RS04375 (SCRE_0861) ffh 875122..876696 (+) 1575 WP_006267934.1 signal recognition particle protein -
  SCRE_RS04380 (SCRE_0862) xerS 876871..877941 (+) 1071 WP_006267924.1 tyrosine recombinase XerS Machinery gene
  SCRE_RS04385 (SCRE_0863) - 878152..879141 (-) 990 WP_006267734.1 lipoate--protein ligase -
  SCRE_RS04390 (SCRE_0864) lpdA 879153..880859 (-) 1707 WP_006267785.1 dihydrolipoyl dehydrogenase -
  SCRE_RS04395 (SCRE_0865) - 880895..881938 (-) 1044 WP_006267832.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41314.46 Da        Isoelectric Point: 9.5178

>NTDB_id=50405 SCRE_RS04380 WP_006267924.1 876871..877941(+) (xerS) [Streptococcus constellatus subsp. pharyngis C232]
MKRELLLERIEKLKTILPWYVLEYYQSKLTVPYSFTTLYEYLKEYNRFFQWILDSGIADVSQIAEIPLLVLENMTKKDME
SFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGTETEQFLNYIDEEYPKSLSNRALSSFDKNKERDLAIIALLLASGIRLSEAVNLDLKDFNLKMMVIEVTRKGGKRDS
VNVAAFAKPYLEAYLEIRAKRYKAEKSDTAFFLTEYRGVPNRIDASSVEKMVAKYSENFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=50405 SCRE_RS04380 WP_006267924.1 876871..877941(+) (xerS) [Streptococcus constellatus subsp. pharyngis C232]
ATGAAGCGTGAACTACTTTTAGAAAGAATTGAAAAACTAAAGACTATTCTACCCTGGTATGTTTTGGAATATTATCAATC
TAAATTAACTGTTCCATACAGTTTTACAACCTTATATGAATATCTTAAAGAATACAATCGTTTTTTTCAGTGGATTTTAG
ACTCTGGAATTGCTGATGTCTCACAAATTGCAGAAATTCCTTTATTGGTGTTGGAAAATATGACTAAAAAAGATATGGAA
TCATTTATCCTTTACCTACGGGAACGACCGCTGCTTAATGCTAATACCACGCAAAACGGAGTATCTCAAACAACTATTAA
CCGCACTCTTTCAGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGAGAGCCTTATTTTT
ATCGTAATGTTATGAAAAAAGTGTCCACTAAGAAAAAGAAAGAAACTTTAGCTGCACGAGCTGAAAATATTAAACAAAAG
CTCTTTTTAGGCACGGAAACTGAACAATTTTTGAATTATATTGATGAAGAATATCCTAAAAGTTTATCTAACCGCGCCCT
CTCCTCTTTCGACAAAAATAAAGAGCGAGATTTGGCAATTATAGCATTGCTTCTTGCATCTGGTATTCGCCTATCCGAGG
CGGTCAATCTTGATTTGAAAGACTTTAACCTAAAAATGATGGTCATTGAAGTGACTCGTAAGGGCGGAAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAACCCTACTTGGAAGCCTATCTTGAGATTCGGGCCAAACGCTATAAAGCTGAAAAATC
CGATACTGCCTTCTTTTTGACAGAATATAGAGGAGTTCCCAATCGCATTGATGCATCTAGTGTAGAAAAAATGGTTGCCA
AGTATTCTGAAAATTTTAAAGTTCGAGTGACTCCTCACAAACTCCGCCACACTCTAGCTACTAGGCTTTATGATGCGACC
AAGTCCCAGGTCCTGGTCAGCCATCAGCTAGGACATGCCAGCACCCAGGTCACTGACCTCTACACCCACATTGTTAATGA
CGAGCAAAAGAATGCATTGGATAACTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P657

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

87.36

100

0.874

Multiple sequence alignment