Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KRG72_RS02900 Genome accession   NZ_CP076703
Coordinates   547412..549070 (+) Length   552 a.a.
NCBI ID   WP_258255802.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 542412..554070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS02870 (KRG72_02870) - 542988..543557 (+) 570 WP_258255798.1 L,D-transpeptidase -
  KRG72_RS02875 (KRG72_02875) xseA 543722..545050 (+) 1329 WP_258255799.1 exodeoxyribonuclease VII large subunit -
  KRG72_RS02880 (KRG72_02880) - 545040..545255 (+) 216 WP_006531527.1 exodeoxyribonuclease VII small subunit -
  KRG72_RS02885 (KRG72_02885) - 545255..546124 (+) 870 WP_258255800.1 polyprenyl synthetase family protein -
  KRG72_RS02890 (KRG72_02890) - 546117..546941 (+) 825 WP_258255801.1 TlyA family RNA methyltransferase -
  KRG72_RS02895 (KRG72_02895) - 546928..547398 (+) 471 WP_074563288.1 arginine repressor -
  KRG72_RS02900 (KRG72_02900) recN 547412..549070 (+) 1659 WP_258255802.1 DNA repair protein RecN Machinery gene
  KRG72_RS02905 (KRG72_02905) - 549209..550051 (+) 843 WP_133018059.1 DegV family protein -
  KRG72_RS02910 (KRG72_02910) - 550044..550892 (+) 849 WP_157628809.1 SGNH/GDSL hydrolase family protein -
  KRG72_RS02915 (KRG72_02915) - 550861..551463 (+) 603 WP_039697264.1 YpmS family protein -
  KRG72_RS02920 (KRG72_02920) - 551558..551833 (+) 276 WP_009853724.1 HU family DNA-binding protein -
  KRG72_RS02925 (KRG72_02925) - 552012..552209 (+) 198 WP_074559520.1 hypothetical protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62559.81 Da        Isoelectric Point: 4.6335

>NTDB_id=504041 KRG72_RS02900 WP_258255802.1 547412..549070(+) (recN) [Streptococcus equinus strain S1]
MLLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGARASLDVIRHGANKAEIEGLFSVGENAALTQIL
EENGIEVTEELIIRREILQNGRSIGRINGQMVNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGDSHFASVKKH
YQDLFERYRRLRKRVLTKQKNEQEHKARIEMLEFQIAEIEAAALKSGEDQVLNQKRDKLLNHKHIADTLTNAYVMLDDEE
FSSLSNIRSAMNDLMTLEEFDADYKDMSSNVSEAYYILEEVTKHLGDVIDELDFDAGSLQQIEARLEVIYSITRKYGGSV
DDVLDYYENITKEYNLLTGNDESSDDMEKELKRLEKELIVAAENLSQERHHLAKDLEAEIKQELADLYMEKADFQVQFSK
GKFNRDGNEAIEFYISTNPGEGFKPLVKVASGGEISRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
SHGQVLAISHLPQVIAIADYQFFIEKRSDENTTVSTVRLLSEEERVEEIAKMLAGSDITEMAREQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=504041 KRG72_RS02900 WP_258255802.1 547412..549070(+) (recN) [Streptococcus equinus strain S1]
ATGCTTTTAGAAATTTCCATTAAAAATTTTGCCATCATTGAAGAAATCTCATTGACTTTTGAAAATGGCATGACCGTTTT
GACGGGTGAAACTGGTGCAGGGAAGTCTATTATTATCGACGCCATGAATCTCATGCTTGGTGCGCGTGCGAGTCTTGATG
TCATCCGTCATGGGGCAAATAAAGCTGAAATTGAAGGTCTGTTTTCAGTTGGTGAAAATGCTGCGCTCACGCAAATTCTG
GAAGAAAACGGCATTGAAGTTACGGAAGAATTAATTATTCGCCGCGAAATTTTGCAAAATGGTCGTTCAATTGGTCGCAT
TAATGGTCAGATGGTTAACCTTACAACCCTTCGTGCTGTTGGGCAATATTTGGTTGATATTCATGGGCAACATGACCAAG
AAGAATTGATGAAACCAAATATGCACATTCGTATGCTGGATGAATTTGGGGATAGCCATTTTGCTTCGGTCAAGAAACAC
TACCAAGACCTTTTTGAACGTTATCGCCGCTTGCGTAAACGTGTTTTAACCAAGCAAAAAAATGAGCAAGAACATAAGGC
TCGTATCGAAATGCTGGAATTTCAAATTGCAGAGATTGAAGCAGCTGCCCTAAAATCAGGTGAAGACCAAGTTCTAAACC
AAAAACGTGATAAGTTGTTAAATCACAAACATATCGCAGACACATTAACCAATGCTTATGTCATGCTTGATGATGAAGAG
TTTTCAAGCTTGTCAAACATTCGTTCAGCTATGAACGACTTGATGACCTTGGAAGAATTCGATGCGGATTACAAAGATAT
GTCATCAAATGTTTCTGAAGCTTATTATATTTTAGAAGAAGTGACTAAGCACTTAGGTGATGTTATTGATGAGCTTGATT
TTGATGCTGGCAGTCTTCAACAAATTGAAGCTCGTTTAGAAGTGATTTACAGCATTACCCGTAAATACGGTGGCAGTGTT
GATGATGTTTTAGATTATTACGAAAATATCACCAAAGAGTACAATCTTTTGACTGGCAACGATGAGTCATCTGATGATAT
GGAAAAAGAGCTCAAACGCCTAGAAAAAGAATTGATTGTTGCTGCTGAGAATCTTAGCCAAGAACGTCATCACTTAGCTA
AGGACCTAGAAGCTGAAATCAAGCAAGAATTGGCTGATTTGTACATGGAAAAAGCTGATTTTCAAGTGCAATTTAGCAAG
GGAAAATTCAATCGTGATGGGAATGAAGCTATTGAATTTTACATTTCAACTAACCCTGGTGAAGGTTTTAAGCCTTTGGT
TAAGGTAGCCTCTGGTGGTGAAATTTCACGTTTAATGTTGGCTATAAAATCTGCCTTTTCACGTAAAGAAGACAAGACAA
GTATTGTCTTTGATGAGGTTGATACAGGAGTTTCTGGACGTGTAGCGCAAGCTATTGCCCAAAAAATCTATAAAATCGGT
AGTCACGGGCAAGTTTTGGCGATTTCACACTTGCCACAAGTGATTGCAATTGCGGATTATCAATTCTTTATTGAAAAACG
TAGTGATGAAAATACAACAGTTTCAACAGTGCGTTTGTTAAGTGAAGAAGAGCGTGTGGAAGAAATTGCAAAAATGCTTG
CTGGTAGTGATATTACGGAAATGGCGCGTGAACAAGCGCGTGAATTGCTAAAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.112

100

0.455