Detailed information NTG0050404

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SCRE_RS04185
• Genome accession: NC_022236
• Coordinates: 839851..840960 (+)
• Length: 369 a.a.
• NCBI ID: WP_020997774.1
• Uniprot ID: U2ZGR2
• Organism: Streptococcus constellatus subsp. pharyngis C232
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 834851..845960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCRE_RS04165 (SCRE_0821)	-	836751..837089 (+)	339	WP_003069168.1	ATP cone domain-containing protein	-
SCRE_RS04170 (SCRE_0822)	rpsU	837251..837427 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
SCRE_RS04175 (SCRE_0823)	mscL	837541..837918 (-)	378	WP_006267895.1	large conductance mechanosensitive channel protein MscL	-
SCRE_RS04180 (SCRE_0824)	dnaG	838073..839848 (+)	1776	WP_022525636.1	DNA primase	-
SCRE_RS04185 (SCRE_0825)	rpoS	839851..840960 (+)	1110	WP_020997774.1	RNA polymerase sigma factor RpoD	Regulator
SCRE_RS04190 (SCRE_0826)	-	840979..841308 (+)	330	WP_003069160.1	metal-sulfur cluster assembly factor	-
SCRE_RS04195 (SCRE_0827)	brnQ	841451..842779 (+)	1329	WP_006269526.1	branched-chain amino acid transport system II carrier protein	-
SCRE_RS04200 (SCRE_0828)	ccdA2	842921..843631 (+)	711	WP_006267815.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SCRE_RS04205 (SCRE_0829)	-	843648..844232 (+)	585	WP_020997775.1	redoxin family protein	-
SCRE_RS04210 (SCRE_0830)	msrB	844245..845354 (+)	1110	WP_006267871.1	peptide-methionine (R)-S-oxide reductase MsrB	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42266.91 Da
• Isoelectric Point: 4.4765

>NTDB_id=50404 SCRE_RS04185 WP_020997774.1 839851..840960(+) (rpoS) [Streptococcus constellatus subsp. pharyngis C232]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLNADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEA
ELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=50404 SCRE_RS04185 WP_020997774.1 839851..840960(+) (rpoS) [Streptococcus constellatus subsp. pharyngis C232]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAGATTAATGATCAATTAGTCATTCCATTTACTTTAAATGCTGATGGTATTGAGGATCTTCTTCAAC
GAATTCAGGACGCAGGGATTGCTATTACGGATAAAGAGGGCAACCCAAGTGAACGGGTTTTAAATACAGAGGAAGAAGCT
GAATTAACAGACGAGGAGTTGCTTGGTAGCAATTCTGCTAAAGTAAACGACCCTGTCCGTATGTATTTAAAGGAAATTGG
TGTTGTTCCGCTGTTGACCAATGAAGAAGAGCAAGAATTAGCTGTCCTCGTGGAACAAGGCGATTTAGAAGCCAAGCAAC
GTTTGGCGGAAGCTAATTTGCGGTTGGTCGTTTCCATCGCTAAGCGCTATGTTGGGCGTGGCATGCAGTTTCTCGACTTG
ATTCAAGAAGGAAATATGGGATTGATGAAAGCTGTTGATAAGTTTGACTATACTAAAGGTTTCAAATTTTCAACATATGC
TACTTGGTGGATTCGTCAAGCGATTACTCGTGCGATTGCTGATCAAGCTCGTACGATTCGGATTCCGGTTCACATGGTTG
AAACGATTAATAAATTAGTGCGGGAACAACGAAATCTTTTACAAGAATTGGGACAAGATCCAACACCAGAGCAAATTGCA
GAGCGGATGGATATGACGCCTGATAAAGTCCGTGAAATTTTGAAGATTGCACAAGAACCTGTTTCTCTTGAAACACCAAT
TGGAGAGGAAGATGATAGTCATTTGGGTGATTTCATTGAGGATGAGGTTATTGAAAATCCAGTTGATTATACAACGCGTA
TCGTTTTGCGTGAGCAATTAGATGAAGTTCTTGATACATTAACAGACCGTGAAGAAAATGTGCTGCGTCTGCGTTTTGGG
CTAGATGATGGGAAAATGCGTACACTGGAAGATGTTGGAAAAGTATTTAACGTAACTCGTGAACGGATTCGACAAATTGA
GGCTAAAGCCCTGCGCAAATTGCGTCATCCAAGTCGTAGCAAACCGCTTCGTGACTTTATTGAGGATTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-85)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

3D structure

• AlphaFold DB: U2ZGR2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.416	79.404	0.369