Detailed information NTG0503958

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KQ259_RS14575
• Genome accession: NZ_CP076697
• Coordinates: 2955607..2956599 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S10EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2950607..2961599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ259_RS14555 (KQ259_14555)	ygbM	2951245..2952021 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
KQ259_RS14560 (KQ259_14560)	ygbN	2952110..2953474 (+)	1365	WP_000104433.1	GntP family transporter	-
KQ259_RS14565 (KQ259_14565)	-	2953617..2954660 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
KQ259_RS14570 (KQ259_14570)	-	2954885..2955436 (+)	552	WP_001179444.1	flavodoxin family protein	-
KQ259_RS14575 (KQ259_14575)	rpoS	2955607..2956599 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KQ259_RS14580 (KQ259_14580)	nlpD	2956662..2957756 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
KQ259_RS14585 (KQ259_14585)	pcm	2957941..2958567 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KQ259_RS14590 (KQ259_14590)	surE	2958561..2959322 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KQ259_RS14595 (KQ259_14595)	truD	2959303..2960352 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
KQ259_RS14600 (KQ259_14600)	ispF	2960349..2960828 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KQ259_RS14605 (KQ259_14605)	ispD	2960828..2961538 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503958 KQ259_RS14575 WP_000081550.1 2955607..2956599(-) (rpoS) [Escherichia coli strain S10EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503958 KQ259_RS14575 WP_000081550.1 2955607..2956599(-) (rpoS) [Escherichia coli strain S10EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715