Detailed information NTG0503870

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KQ261_RS15020
• Genome accession: NZ_CP076693
• Coordinates: 3029592..3030584 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S103EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3024592..3035584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ261_RS15000 (KQ261_15000)	ygbM	3025230..3026006 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
KQ261_RS15005 (KQ261_15005)	ygbN	3026095..3027459 (+)	1365	WP_000104433.1	GntP family transporter	-
KQ261_RS15010 (KQ261_15010)	-	3027602..3028645 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
KQ261_RS15015 (KQ261_15015)	-	3028870..3029421 (+)	552	WP_001179444.1	flavodoxin family protein	-
KQ261_RS15020 (KQ261_15020)	rpoS	3029592..3030584 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KQ261_RS15025 (KQ261_15025)	nlpD	3030647..3031741 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
KQ261_RS15030 (KQ261_15030)	pcm	3031926..3032552 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KQ261_RS15035 (KQ261_15035)	surE	3032546..3033307 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KQ261_RS15040 (KQ261_15040)	truD	3033288..3034337 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
KQ261_RS15045 (KQ261_15045)	ispF	3034334..3034813 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KQ261_RS15050 (KQ261_15050)	ispD	3034813..3035523 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503870 KQ261_RS15020 WP_000081550.1 3029592..3030584(-) (rpoS) [Escherichia coli strain S103EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503870 KQ261_RS15020 WP_000081550.1 3029592..3030584(-) (rpoS) [Escherichia coli strain S103EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715