Detailed information NTG0503783

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KQ260_RS15285
• Genome accession: NZ_CP076689
• Coordinates: 3054975..3055967 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S21EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3049975..3060967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ260_RS15265 (KQ260_15240)	ygbM	3050613..3051389 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
KQ260_RS15270 (KQ260_15245)	ygbN	3051478..3052842 (+)	1365	WP_000104433.1	GntP family transporter	-
KQ260_RS15275 (KQ260_15250)	-	3052985..3054028 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
KQ260_RS15280 (KQ260_15255)	-	3054253..3054804 (+)	552	WP_001179444.1	flavodoxin family protein	-
KQ260_RS15285 (KQ260_15260)	rpoS	3054975..3055967 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KQ260_RS15290 (KQ260_15265)	nlpD	3056030..3057124 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
KQ260_RS15295 (KQ260_15270)	pcm	3057309..3057935 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KQ260_RS15300 (KQ260_15275)	surE	3057929..3058690 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KQ260_RS15305 (KQ260_15280)	truD	3058671..3059720 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
KQ260_RS15310 (KQ260_15285)	ispF	3059717..3060196 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KQ260_RS15315 (KQ260_15290)	ispD	3060196..3060906 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503783 KQ260_RS15285 WP_000081550.1 3054975..3055967(-) (rpoS) [Escherichia coli strain S21EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503783 KQ260_RS15285 WP_000081550.1 3054975..3055967(-) (rpoS) [Escherichia coli strain S21EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715