Detailed information NTG0503695

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KQ258_RS14995
• Genome accession: NZ_CP076687
• Coordinates: 3029938..3030930 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S22EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3024938..3035930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ258_RS14975 (KQ258_14970)	ygbM	3025576..3026352 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
KQ258_RS14980 (KQ258_14975)	ygbN	3026441..3027805 (+)	1365	WP_000104433.1	GntP family transporter	-
KQ258_RS14985 (KQ258_14980)	-	3027948..3028991 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
KQ258_RS14990 (KQ258_14985)	-	3029216..3029767 (+)	552	WP_001179444.1	flavodoxin family protein	-
KQ258_RS14995 (KQ258_14990)	rpoS	3029938..3030930 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KQ258_RS15000 (KQ258_14995)	nlpD	3030993..3032087 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
KQ258_RS15005 (KQ258_15000)	pcm	3032272..3032898 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KQ258_RS15010 (KQ258_15005)	surE	3032892..3033653 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KQ258_RS15015 (KQ258_15010)	truD	3033634..3034683 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
KQ258_RS15020 (KQ258_15015)	ispF	3034680..3035159 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KQ258_RS15025 (KQ258_15020)	ispD	3035159..3035869 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503695 KQ258_RS14995 WP_000081550.1 3029938..3030930(-) (rpoS) [Escherichia coli strain S22EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503695 KQ258_RS14995 WP_000081550.1 3029938..3030930(-) (rpoS) [Escherichia coli strain S22EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715