Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KPF23_RS10865 Genome accession   NZ_CP076675
Coordinates   2249081..2250037 (+) Length   318 a.a.
NCBI ID   WP_004916143.1    Uniprot ID   E4TAL4
Organism   Riemerella anatipestifer strain XG19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2244081..2255037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF23_RS10835 (KPF23_10835) - 2244550..2245194 (+) 645 WP_038694243.1 DUF4271 domain-containing protein -
  KPF23_RS10840 (KPF23_10840) - 2245216..2245959 (+) 744 WP_014937684.1 uroporphyrinogen-III synthase -
  KPF23_RS10845 (KPF23_10845) - 2246059..2248107 (+) 2049 WP_014937683.1 S9 family peptidase -
  KPF23_RS10850 (KPF23_10850) rpmB 2248379..2248615 (+) 237 WP_004916140.1 50S ribosomal protein L28 -
  KPF23_RS10855 (KPF23_10855) rpmG 2248626..2248808 (+) 183 WP_004916141.1 50S ribosomal protein L33 -
  KPF23_RS10860 (KPF23_10860) - 2248831..2248980 (+) 150 WP_004916142.1 DUF4295 family protein -
  KPF23_RS10865 (KPF23_10865) pilA 2249081..2250037 (+) 957 WP_004916143.1 signal recognition particle-docking protein FtsY Machinery gene
  KPF23_RS10870 (KPF23_10870) - 2250078..2250332 (+) 255 WP_004916144.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KPF23_RS10875 (KPF23_10875) topA 2250519..2253038 (+) 2520 WP_014937682.1 type I DNA topoisomerase -
  KPF23_RS10880 (KPF23_10880) - 2253050..2254114 (+) 1065 WP_014937681.1 formimidoylglutamase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34733.97 Da        Isoelectric Point: 6.0732

>NTDB_id=503652 KPF23_RS10865 WP_004916143.1 2249081..2250037(+) (pilA) [Riemerella anatipestifer strain XG19]
MSWFKKIFKKEEKETLDRGLEKSSQGFFEKISKAVIGKSKVDDEVLDDLEEVLIASDVGAQTTIKIIERIEDRVARDKYV
GVDELHKLLKEEITALLLENPHADTGNIDEAKKPYVIMVVGVNGVGKTTTIGKLAHQFKTQGKKVVLGAADTFRAAAVDQ
LVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVAQNADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVIPDAPHEVLLVL
DGSTGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEFVDSLFKKKS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=503652 KPF23_RS10865 WP_004916143.1 2249081..2250037(+) (pilA) [Riemerella anatipestifer strain XG19]
ATGAGTTGGTTTAAAAAAATATTCAAAAAAGAAGAGAAGGAAACTTTAGATAGAGGGTTAGAAAAGTCAAGTCAAGGCTT
TTTTGAAAAAATATCCAAAGCAGTCATAGGGAAAAGTAAGGTAGATGATGAAGTTTTAGATGATTTGGAAGAGGTTCTTA
TTGCATCAGATGTAGGGGCTCAGACAACTATCAAGATTATCGAACGAATTGAAGATAGAGTTGCTAGGGATAAGTATGTT
GGTGTAGATGAACTACATAAGCTTCTTAAAGAAGAAATTACAGCATTGCTTTTAGAAAATCCTCATGCTGATACGGGGAA
TATAGATGAGGCTAAAAAACCTTACGTAATAATGGTGGTGGGAGTCAATGGAGTAGGTAAAACAACTACGATAGGTAAAT
TAGCACATCAGTTTAAAACACAGGGTAAAAAAGTGGTGCTAGGAGCAGCAGATACTTTTAGAGCGGCGGCGGTGGACCAG
CTGGTGATATGGAGTGAGCGAGTAGGTGTACCTATTGTAAAGCAAAATATGGGTTCTGACCCTGCTTCTGTTGCCTTTGA
TACAGTGCAATCTGCAGTAGCTCAAAATGCAGATGTAGTACTTATAGATACAGCTGGGAGGCTTCATAATAAAGTAAATC
TAATGAATGAATTGTCTAAGATAAAAAGAGTAATGCAGAAAGTAATTCCTGATGCTCCACATGAGGTTTTATTGGTATTA
GACGGTTCTACAGGGCAAAATGCATTTGAACAAGCTAAGCAATTTACTGCTGCAACAGAAGTTAATGCTCTTGCGGTTAC
AAAATTAGATGGTACGGCAAAAGGAGGTGTGGTTATTGGTATTTCTGATCAATTTCAAGTTCCTGTAAAATATATAGGGG
TAGGAGAGAAGATGGAAGACTTGCAGTTATTTAATGGCACGGAGTTTGTTGACTCTCTCTTCAAGAAAAAGAGTTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(115-314)

SRP54-type protein, helical bundle domain (SRP54_N)

(28-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TAL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.515

94.654

0.431