Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SCRE_RS00210 Genome accession   NC_022236
Coordinates   28667..29440 (+) Length   257 a.a.
NCBI ID   WP_020997514.1    Uniprot ID   U2ZIS1
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23667..34440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS00190 (SCRE_0039) mreD 24337..24837 (+) 501 WP_003071293.1 rod shape-determining protein MreD -
  SCRE_RS00195 (SCRE_0040) pcsB 24947..26158 (+) 1212 WP_020997512.1 peptidoglycan hydrolase PcsB -
  SCRE_RS00200 (SCRE_0041) - 26299..27270 (+) 972 WP_020997513.1 ribose-phosphate diphosphokinase -
  SCRE_RS00205 (SCRE_0042) - 27502..28689 (+) 1188 WP_006269045.1 pyridoxal phosphate-dependent aminotransferase -
  SCRE_RS00210 (SCRE_0043) recO 28667..29440 (+) 774 WP_020997514.1 DNA repair protein RecO Machinery gene
  SCRE_RS00215 (SCRE_0044) plsX 29437..30435 (+) 999 WP_006268917.1 phosphate acyltransferase PlsX -
  SCRE_RS00220 (SCRE_0045) - 30432..30677 (+) 246 WP_003071282.1 acyl carrier protein -
  SCRE_RS00225 (SCRE_0046) purC 30836..31543 (+) 708 WP_006269231.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30116.58 Da        Isoelectric Point: 6.0944

>NTDB_id=50359 SCRE_RS00210 WP_020997514.1 28667..29440(+) (recO) [Streptococcus constellatus subsp. pharyngis C232]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVMADFLMKINDDGLSYIDDYQEIRTFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFVFLQKTLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECRFCHRVG
LPFDFSFTYSGVLCPEHYDKDERRSHLEPNIPYLLDQFQAVQFSELETISLKSELKKQLRKVIDQIYEEYVGIHLKSKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=50359 SCRE_RS00210 WP_020997514.1 28667..29440(+) (recO) [Streptococcus constellatus subsp. pharyngis C232]
ATGCTGAAATCTATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAGTTGGTCAAAATTTT
CACAGAGCAAGCGGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTATTCAACCACTAG
TAATGGCAGATTTTTTGATGAAAATAAATGATGACGGTTTAAGTTATATTGATGATTATCAAGAAATTAGAACTTTTCAG
CATATCAATCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTGGCGGATGCCAGTATTCAGGATAATGA
AATAGATTCTGCTCTCTTTGTTTTTTTGCAAAAAACATTAGAATTGATGGAGCAAGGTTTGGACTATGAAGTCTTGACAA
ATATTTTTGAAATTCAAATTTTATCGCGTTTTGGTGTTTCTTTGAATTTCCATGAATGTCGTTTTTGCCATCGAGTAGGA
CTGCCGTTTGATTTTTCTTTTACTTATAGTGGCGTTTTATGTCCGGAGCATTACGACAAGGACGAGCGACGGAGTCATTT
GGAGCCCAATATTCCTTACTTATTAGACCAATTTCAGGCTGTTCAATTTAGTGAACTGGAGACAATTTCTTTGAAATCTG
AATTGAAAAAACAATTGCGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGTCCAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATCTTAAAGAACAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZIS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747

Multiple sequence alignment