Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KPE96_RS22905 Genome accession   NZ_CP076654
Coordinates   4760170..4761162 (-) Length   330 a.a.
NCBI ID   WP_000224461.1    Uniprot ID   -
Organism   Escherichia coli strain NC19     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4755170..4766162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPE96_RS22895 (KPE96_22895) yieP 4758062..4758754 (+) 693 WP_074485254.1 FadR/GntR family transcriptional regulator -
  KPE96_RS22900 (KPE96_22900) mdtD 4758777..4760204 (+) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  KPE96_RS22905 (KPE96_22905) cytR 4760170..4761162 (-) 993 WP_000224461.1 ribose operon transcriptional repressor RbsR Regulator
  KPE96_RS22910 (KPE96_22910) rbsK 4761166..4762095 (-) 930 WP_001300603.1 ribokinase -
  KPE96_RS22915 (KPE96_22915) rbsB 4762221..4763111 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KPE96_RS22920 (KPE96_22920) rbsC 4763136..4764101 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  KPE96_RS22925 (KPE96_22925) rbsA 4764106..4765611 (-) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  KPE96_RS22930 (KPE96_22930) rbsD 4765619..4766038 (-) 420 WP_001364631.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36541.85 Da        Isoelectric Point: 5.0626

>NTDB_id=503520 KPE96_RS22905 WP_000224461.1 4760170..4761162(-) (cytR) [Escherichia coli strain NC19]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPALLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=503520 KPE96_RS22905 WP_000224461.1 4760170..4761162(-) (cytR) [Escherichia coli strain NC19]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCTCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364