Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KPE96_RS09170 Genome accession   NZ_CP076654
Coordinates   1900314..1901741 (-) Length   475 a.a.
NCBI ID   WP_000980609.1    Uniprot ID   -
Organism   Escherichia coli strain NC19     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895314..1906741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPE96_RS09140 (KPE96_09140) yeeZ 1895369..1896193 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KPE96_RS09145 (KPE96_09145) yeeY 1896239..1897168 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KPE96_RS09150 (KPE96_09150) yoeI 1897383..1897445 (+) 63 WP_010723108.1 membrane protein YoeI -
  KPE96_RS09155 (KPE96_09155) plaP 1897435..1898793 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KPE96_RS09160 (KPE96_09160) tsuA 1898972..1900030 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  KPE96_RS09165 (KPE96_09165) tsuB 1900044..1900271 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KPE96_RS09170 (KPE96_09170) sbcB 1900314..1901741 (-) 1428 WP_000980609.1 exodeoxyribonuclease I Machinery gene
  KPE96_RS09175 (KPE96_09175) dacD 1901950..1903116 (+) 1167 WP_000830171.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KPE96_RS09180 (KPE96_09180) sbmC 1903235..1903708 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  KPE96_RS09185 (KPE96_09185) yeeA 1903907..1904965 (+) 1059 WP_001200891.1 FUSC family protein -
  KPE96_RS09190 (KPE96_09190) tmaR 1905137..1905466 (+) 330 WP_000450409.1 DUF496 family protein -
  KPE96_RS09195 (KPE96_09195) - 1905567..1905758 (-) 192 Protein_1804 EutP/PduV family microcompartment system protein -
  KPE96_RS09200 (KPE96_09200) cobU 1905925..1906470 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4700

>NTDB_id=503477 KPE96_RS09170 WP_000980609.1 1900314..1901741(-) (sbcB) [Escherichia coli strain NC19]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYVDDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=503477 KPE96_RS09170 WP_000980609.1 1900314..1901741(-) (sbcB) [Escherichia coli strain NC19]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACTTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGTCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583