Detailed information NTG0503464

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KPE96_RS05585
• Genome accession: NZ_CP076654
• Coordinates: 1136085..1137077 (+)
• Length: 330 a.a.
• NCBI ID: WP_048943255.1
• Uniprot ID: -
• Organism: Escherichia coli strain NC19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1131085..1142077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KPE96_RS05555 (KPE96_05555)	ispD	1131146..1131856 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KPE96_RS05560 (KPE96_05560)	ispF	1131856..1132335 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KPE96_RS05565 (KPE96_05565)	truD	1132332..1133381 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KPE96_RS05570 (KPE96_05570)	surE	1133362..1134123 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KPE96_RS05575 (KPE96_05575)	pcm	1134117..1134743 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KPE96_RS05580 (KPE96_05580)	nlpD	1134928..1136022 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KPE96_RS05585 (KPE96_05585)	rpoS	1136085..1137077 (+)	993	WP_048943255.1	RNA polymerase sigma factor RpoS	Regulator
KPE96_RS05590 (KPE96_05590)	ygbN	1137171..1138535 (-)	1365	WP_000104456.1	GntP family transporter	-
KPE96_RS05595 (KPE96_05595)	ygbM	1138624..1139400 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KPE96_RS05600 (KPE96_05600)	ygbL	1139405..1140043 (-)	639	WP_001278994.1	aldolase	-
KPE96_RS05605 (KPE96_05605)	otnK	1140040..1141302 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=503464 KPE96_RS05585 WP_048943255.1 1136085..1137077(+) (rpoS) [Escherichia coli strain NC19]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEATTLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503464 KPE96_RS05585 WP_048943255.1 1136085..1137077(+) (rpoS) [Escherichia coli strain NC19]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGACAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715