Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KP013_RS08725 Genome accession   NZ_CP076646
Coordinates   1831070..1832497 (-) Length   475 a.a.
NCBI ID   WP_072643206.1    Uniprot ID   -
Organism   Escherichia coli strain GD33     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826070..1837497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP013_RS08695 (KP013_08695) yeeZ 1826125..1826949 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  KP013_RS08700 (KP013_08700) yeeY 1826995..1827924 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KP013_RS08705 (KP013_08705) yoeI 1828139..1828201 (+) 63 WP_010723108.1 membrane protein YoeI -
  KP013_RS08710 (KP013_08710) plaP 1828191..1829549 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KP013_RS08715 (KP013_08715) tsuA 1829728..1830786 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  KP013_RS08720 (KP013_08720) tsuB 1830800..1831027 (+) 228 WP_000985279.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KP013_RS08725 (KP013_08725) sbcB 1831070..1832497 (-) 1428 WP_072643206.1 exodeoxyribonuclease I Machinery gene
  KP013_RS08730 (KP013_08730) dacD 1832706..1833872 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KP013_RS08735 (KP013_08735) sbmC 1833991..1834464 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KP013_RS08740 (KP013_08740) yeeA 1834662..1835720 (+) 1059 WP_001200891.1 FUSC family protein -
  KP013_RS08745 (KP013_08745) tmaR 1835892..1836221 (+) 330 WP_000450409.1 DUF496 family protein -
  KP013_RS26085 (KP013_08750) - 1836322..1836504 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KP013_RS25650 - 1836624..1836704 (+) 81 WP_023441679.1 hypothetical protein -
  KP013_RS08760 (KP013_08760) - 1836993..1837073 (-) 81 Protein_1726 hypothetical protein -
  KP013_RS08765 (KP013_08765) yeeW 1837119..1837313 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.79 Da        Isoelectric Point: 5.4700

>NTDB_id=503400 KP013_RS08725 WP_072643206.1 1831070..1832497(-) (sbcB) [Escherichia coli strain GD33]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=503400 KP013_RS08725 WP_072643206.1 1831070..1832497(-) (sbcB) [Escherichia coli strain GD33]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585