Detailed information NTG0503388

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KP013_RS05065
• Genome accession: NZ_CP076646
• Coordinates: 1050180..1051172 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GD33
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1045180..1056172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KP013_RS05035 (KP013_05035)	ispD	1045241..1045951 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KP013_RS05040 (KP013_05040)	ispF	1045951..1046430 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KP013_RS05045 (KP013_05045)	truD	1046427..1047476 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
KP013_RS05050 (KP013_05050)	surE	1047457..1048218 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KP013_RS05055 (KP013_05055)	pcm	1048212..1048838 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KP013_RS05060 (KP013_05060)	nlpD	1049023..1050117 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KP013_RS05065 (KP013_05065)	rpoS	1050180..1051172 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KP013_RS05070 (KP013_05070)	ygbN	1051266..1052630 (-)	1365	WP_000104441.1	GntP family transporter	-
KP013_RS05075 (KP013_05075)	ygbM	1052719..1053495 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KP013_RS05080 (KP013_05080)	ygbL	1053500..1054138 (-)	639	WP_001278994.1	aldolase	-
KP013_RS05085 (KP013_05085)	otnK	1054135..1055397 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503388 KP013_RS05065 WP_000081550.1 1050180..1051172(+) (rpoS) [Escherichia coli strain GD33]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503388 KP013_RS05065 WP_000081550.1 1050180..1051172(+) (rpoS) [Escherichia coli strain GD33]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715