Detailed information NTG0503308

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KP725_RS05385
• Genome accession: NZ_CP076645
• Coordinates: 1128599..1129591 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSI001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1123599..1134591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KP725_RS05355 (KP725_05355)	ispD	1123660..1124370 (+)	711	WP_216684243.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KP725_RS05360 (KP725_05360)	ispF	1124370..1124849 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KP725_RS05365 (KP725_05365)	truD	1124846..1125895 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KP725_RS05370 (KP725_05370)	surE	1125876..1126637 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KP725_RS05375 (KP725_05375)	pcm	1126631..1127257 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KP725_RS05380 (KP725_05380)	nlpD	1127442..1128536 (+)	1095	WP_367650929.1	murein hydrolase activator NlpD	-
KP725_RS05385 (KP725_05385)	rpoS	1128599..1129591 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KP725_RS05390 (KP725_05390)	ygbN	1129685..1131049 (-)	1365	WP_000104441.1	GntP family transporter	-
KP725_RS05395 (KP725_05395)	ygbM	1131138..1131914 (-)	777	WP_216684245.1	HPr family phosphocarrier protein	-
KP725_RS05400 (KP725_05400)	ygbL	1131919..1132557 (-)	639	WP_001278994.1	aldolase	-
KP725_RS05405 (KP725_05405)	otnK	1132554..1133816 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503308 KP725_RS05385 WP_000081550.1 1128599..1129591(+) (rpoS) [Escherichia coli strain MSI001]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503308 KP725_RS05385 WP_000081550.1 1128599..1129591(+) (rpoS) [Escherichia coli strain MSI001]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715