Detailed information NTG0503275

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KPE21_RS19695
• Genome accession: NZ_CP076527
• Coordinates: 4063594..4064586 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain L3452210II
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4058594..4069586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KPE21_RS19665 (KPE21_19665)	ispD	4058655..4059365 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KPE21_RS19670 (KPE21_19670)	ispF	4059365..4059844 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KPE21_RS19675 (KPE21_19675)	truD	4059841..4060890 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KPE21_RS19680 (KPE21_19680)	surE	4060871..4061632 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
KPE21_RS19685 (KPE21_19685)	pcm	4061626..4062252 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KPE21_RS19690 (KPE21_19690)	nlpD	4062437..4063531 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KPE21_RS19695 (KPE21_19695)	rpoS	4063594..4064586 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KPE21_RS19700 (KPE21_19700)	ygbN	4064680..4066044 (-)	1365	WP_000104456.1	GntP family transporter	-
KPE21_RS19705 (KPE21_19705)	ygbM	4066133..4066909 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KPE21_RS19710 (KPE21_19710)	ygbL	4066914..4067552 (-)	639	WP_001278994.1	aldolase	-
KPE21_RS19715 (KPE21_19715)	otnK	4067549..4068811 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=503275 KPE21_RS19695 WP_000081550.1 4063594..4064586(+) (rpoS) [Escherichia coli strain L3452210II]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=503275 KPE21_RS19695 WP_000081550.1 4063594..4064586(+) (rpoS) [Escherichia coli strain L3452210II]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715