Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   KPA27_RS05735 Genome accession   NZ_CP076517
Coordinates   1121636..1125286 (-) Length   1216 a.a.
NCBI ID   WP_202847679.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1116636..1130286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS05715 (KPA27_05715) - 1117566..1118069 (-) 504 WP_202847681.1 DUF1232 domain-containing protein -
  KPA27_RS05720 (KPA27_05720) fic 1118102..1118704 (-) 603 WP_202847680.1 protein adenylyltransferase Fic -
  KPA27_RS05725 (KPA27_05725) parE 1118728..1120677 (-) 1950 WP_105156913.1 DNA topoisomerase IV subunit B -
  KPA27_RS05730 (KPA27_05730) plsY 1120820..1121464 (+) 645 WP_024400462.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  KPA27_RS05735 (KPA27_05735) rexA 1121636..1125286 (-) 3651 WP_202847679.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KPA27_RS05740 (KPA27_05740) rexB 1125286..1128552 (-) 3267 WP_202847678.1 ATP-dependent nuclease subunit B Machinery gene

Sequence


Protein


Download         Length: 1216 a.a.        Molecular weight: 139439.61 Da        Isoelectric Point: 5.0595

>NTDB_id=503164 KPA27_RS05735 WP_202847679.1 1121636..1125286(-) (rexA) [Streptococcus suis strain 39565]
MAFEEFLSAEEIRAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETIDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDHLFADYLEEDEKGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKNQIISGLRDLGQEVYELTLLKDYQIQAVPLLTLLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDSNHSQERMLGLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAGEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAHQTNGQHPELMSGELKKKIKDFLSILENWRAYAKLHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNVDKLAEKYDGKKEDGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVHADQAVKDRIDIQKILDFFDTDLGGEILANTD
KLHREAPFASLQTDPVSQEDFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVGVNI

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=503164 KPA27_RS05735 WP_202847679.1 1121636..1125286(-) (rexA) [Streptococcus suis strain 39565]
ATGGCTTTTGAAGAATTTTTAAGCGCGGAAGAAATCAGGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACGCCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTTATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACCAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAGTTGAAGGAGCGGATTGAGAAAAATCTCAATGAAACTATTGCGGAGACGATCGATATGGACTT
GCGTCGGCATTTATCGGCCCAGTTGGCGGATTTGACCAAGGCGGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TAACAACCTATGGTTATAGCCTTGGTATTTCTCCACAGTTTCGGATTTTACAGGATGAGACTGAAAAAGCGAGTCTGAAA
AAAGAGGTCTTCGATCATCTCTTTGCAGATTATCTTGAAGAGGATGAAAAAGGTGCATTCCGCAAACTGGTTCGCAATTT
TTCGGGCAACCGTAAGGATAACAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACAAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGAAGAAATGACTT
TGGATCTGCCAAGTATTTTGCAAATGTGGAAGAAGTCTTGGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAACGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGAAAAGGCCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAACCAGATTATCTCAGGACTACGAGATTTGGGTCA
AGAAGTTTATGAATTGACCCTGCTGAAAGATTATCAGATTCAAGCTGTGCCACTGCTGACATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAGAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAGCAACCATAGCCAAGAGCGAATGCTGGGCCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCAATGATTTTCCAAGAGAAATTTGAACTGTATCAAGCAAATCCTCAGGCTGGA
AAATTGATTTTGCTTAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGAAACCCACAGCCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTACGACCAGCAGGATAGCGCAAACTCTTCAACGGATGCTGGGGAGGAAACACCT
CTAACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGTGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGACCTCATTATGTCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGCGGGTTATCAATAATCCCCTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCGCCTATGTTCCGATTCGATGAGGATGAGCTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCATCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATTTTGGAAAACTGGCGTGCCTATGCCAAACTGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTTGGTGCTCTTCCAAATGGCAGCAAACGTCAGGCCAA
TCTATACGCACTTGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGTTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAATGATAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTTCAGCTGATGACCATT
CATAAGTCAAAAGGTCTGGAGTTCAAATATGTCTTCCTCATGAACATCGATAAGCGATTTAACTTGGAAGACCATTACCA
ATCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTTGCACTAACTCGTGCCGAGAAGAAGCTGTATCTTGTCGGTAAGGGAAATGTTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAGATGGCGTACTTGCCCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGATTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAGTTGTCCTCTGTCCAAGAGTTGAACGAACGCTATAAGGCTGCCATTGAATTACCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAG
CGGACCTTCAACTTGCCAGATTTTTCTAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTCCATGAACTCAT
GCAACGCTTGGACTTGTCTTGGTTGGTGACGGAAGATACGGTAAGAGAAGCTCTAGAAGCTGTCCATGCAGATCAGGCTG
TTAAGGACAGGATTGATATTCAAAAGATTTTAGATTTTTTTGATACAGATTTAGGAGGAGAAATTCTTGCCAATACCGAT
AAACTACATCGTGAGGCTCCCTTTGCCAGCTTGCAGACAGATCCTGTATCACAGGAAGATTTTGTCCTTCGCGGGATTAT
CGATGGCTACCTACTCTATGATGACCATATTGTCCTCTTTGATTACAAGACAGACAAGTATGACCAACCAAGCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTACGCAGAAGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTAATTTTGCTAGGTGGGGAAAGAATTGAAGTGGTTGGAGTCAACATATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.33

100

0.526