Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   KPF79_RS07955 Genome accession   NZ_CP076513
Coordinates   1511463..1512050 (-) Length   195 a.a.
NCBI ID   WP_002810825.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.1157     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506463..1517050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF79_RS07935 (KPF79_07935) - 1507218..1507982 (+) 765 WP_002781156.1 TIGR02757 family protein -
  KPF79_RS07940 (KPF79_07940) - 1507985..1508749 (+) 765 WP_060785322.1 TSUP family transporter -
  KPF79_RS07945 (KPF79_07945) ctsF 1508746..1509921 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  KPF79_RS07950 (KPF79_07950) ctsE 1509908..1511470 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  KPF79_RS07955 (KPF79_07955) ctsX 1511463..1512050 (-) 588 WP_002810825.1 CDC27 family protein Machinery gene
  KPF79_RS07960 (KPF79_07960) ctsP 1512047..1512643 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  KPF79_RS07965 (KPF79_07965) ctsD 1512636..1514054 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF79_RS07970 (KPF79_07970) ctsR 1514032..1514343 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23446.85 Da        Isoelectric Point: 5.5246

>NTDB_id=503102 KPF79_RS07955 WP_002810825.1 1511463..1512050(-) (ctsX) [Campylobacter coli strain R19.1157]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEYKKTLNWQITQAQIANEKNKILQER
LSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSWVLF
AKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=503102 KPF79_RS07955 WP_002810825.1 1511463..1512050(-) (ctsX) [Campylobacter coli strain R19.1157]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTACAAGAAAGA
TTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGATTTTAAATAT
AAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATTATGAAAACA
AAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGGGTTTTATTT
GCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTATGGCTTGAT
TGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(113-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

54.487

80

0.436