Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   KPF79_RS05695 Genome accession   NZ_CP076513
Coordinates   1075098..1075403 (+) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.1157     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1070098..1080403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF79_RS05670 (KPF79_05670) rpsR 1070456..1070716 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  KPF79_RS05675 (KPF79_05675) lon 1070772..1073147 (-) 2376 WP_002783351.1 endopeptidase La -
  KPF79_RS05680 (KPF79_05680) - 1073163..1073810 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  KPF79_RS05685 (KPF79_05685) fliW 1073975..1074364 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  KPF79_RS05690 (KPF79_05690) proC 1074364..1075101 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  KPF79_RS05695 (KPF79_05695) ctsT 1075098..1075403 (+) 306 WP_002790525.1 hypothetical protein Machinery gene
  KPF79_RS05700 (KPF79_05700) - 1075396..1076064 (+) 669 WP_002790524.1 hypothetical protein -
  KPF79_RS05705 (KPF79_05705) - 1076061..1076513 (+) 453 WP_002777117.1 hypothetical protein -
  KPF79_RS05710 (KPF79_05710) - 1076506..1077135 (-) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  KPF79_RS05715 (KPF79_05715) thiE 1077113..1077745 (-) 633 WP_002783359.1 thiamine phosphate synthase -
  KPF79_RS05720 (KPF79_05720) thiD 1077735..1078547 (-) 813 WP_002822374.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KPF79_RS05725 (KPF79_05725) - 1078547..1079230 (-) 684 WP_060785324.1 3-methyladenine DNA glycosylase -
  KPF79_RS05730 (KPF79_05730) - 1079227..1079988 (-) 762 WP_072212081.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=503084 KPF79_RS05695 WP_002790525.1 1075098..1075403(+) (ctsT) [Campylobacter coli strain R19.1157]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=503084 KPF79_RS05695 WP_002790525.1 1075098..1075403(+) (ctsT) [Campylobacter coli strain R19.1157]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475