Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KPF79_RS03210 Genome accession   NZ_CP076513
Coordinates   611455..611835 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain R19.1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 606455..616835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF79_RS03190 (KPF79_03190) - 606564..608498 (-) 1935 WP_060785217.1 ribonuclease R family protein -
  KPF79_RS03195 (KPF79_03195) ilvC 608621..609643 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  KPF79_RS03200 (KPF79_03200) - 609646..610698 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  KPF79_RS03205 (KPF79_03205) dprA 610688..611458 (+) 771 WP_060785216.1 DNA-processing protein DprA Machinery gene
  KPF79_RS03210 (KPF79_03210) dprB 611455..611835 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  KPF79_RS03215 (KPF79_03215) - 611846..612700 (+) 855 WP_370530282.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF79_RS03220 (KPF79_03220) msrA 612923..613423 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF79_RS03225 (KPF79_03225) ppa 613471..613989 (-) 519 WP_060785215.1 inorganic diphosphatase -
  KPF79_RS03230 (KPF79_03230) - 613999..614574 (-) 576 WP_002781658.1 adenylate kinase -
  KPF79_RS03235 (KPF79_03235) aspS 614571..616322 (-) 1752 WP_002781656.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=503075 KPF79_RS03210 WP_002776373.1 611455..611835(+) (dprB) [Campylobacter coli strain R19.1157]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=503075 KPF79_RS03210 WP_002776373.1 611455..611835(+) (dprB) [Campylobacter coli strain R19.1157]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421