Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KPF77_RS06380 Genome accession   NZ_CP076510
Coordinates   1250660..1251526 (-) Length   288 a.a.
NCBI ID   WP_002781285.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.0802     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1245660..1256526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS06355 (KPF77_06355) radA/sms 1246138..1247478 (-) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  KPF77_RS06360 (KPF77_06360) - 1247614..1248465 (+) 852 WP_002781292.1 carbon-nitrogen hydrolase family protein -
  KPF77_RS06365 (KPF77_06365) - 1248468..1249349 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  KPF77_RS06370 (KPF77_06370) - 1249391..1249726 (+) 336 WP_002781288.1 hypothetical protein -
  KPF77_RS06375 (KPF77_06375) - 1249719..1250663 (+) 945 WP_002777375.1 GTP-binding protein -
  KPF77_RS06380 (KPF77_06380) pilA 1250660..1251526 (-) 867 WP_002781285.1 signal recognition particle-docking protein FtsY Machinery gene
  KPF77_RS06385 (KPF77_06385) - 1251526..1252083 (-) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  KPF77_RS06390 (KPF77_06390) - 1252165..1252791 (+) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  KPF77_RS06395 (KPF77_06395) rny 1252712..1254265 (+) 1554 WP_002777382.1 ribonuclease Y -
  KPF77_RS06400 (KPF77_06400) - 1254276..1254833 (+) 558 WP_002781270.1 DedA family protein -
  KPF77_RS06405 (KPF77_06405) - 1254833..1256092 (+) 1260 WP_002781268.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31830.88 Da        Isoelectric Point: 5.1228

>NTDB_id=503044 KPF77_RS06380 WP_002781285.1 1250660..1251526(-) (pilA) [Campylobacter coli strain R19.0802]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIIRISAKAMPHAPHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=503044 KPF77_RS06380 WP_002781285.1 1250660..1251526(-) (pilA) [Campylobacter coli strain R19.0802]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCATTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGTACTCAAG
GCAATGCCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444