Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KPF77_RS03255 Genome accession   NZ_CP076510
Coordinates   644954..645334 (+) Length   126 a.a.
NCBI ID   WP_052774085.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.0802     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 639954..650334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS03235 (KPF77_03235) - 640084..642018 (-) 1935 WP_002816777.1 ribonuclease R family protein -
  KPF77_RS03240 (KPF77_03240) ilvC 642141..643163 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  KPF77_RS03245 (KPF77_03245) - 643166..644197 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  KPF77_RS03250 (KPF77_03250) dprA 644187..644957 (+) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  KPF77_RS03255 (KPF77_03255) dprB 644954..645334 (+) 381 WP_052774085.1 Holliday junction resolvase RuvX Machinery gene
  KPF77_RS03260 (KPF77_03260) - 645345..646199 (+) 855 WP_371827847.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF77_RS03265 (KPF77_03265) msrA 646422..646922 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF77_RS03270 (KPF77_03270) ppa 646970..647488 (-) 519 WP_002776378.1 inorganic diphosphatase -
  KPF77_RS03275 (KPF77_03275) - 647498..648073 (-) 576 WP_002781658.1 adenylate kinase -
  KPF77_RS03280 (KPF77_03280) aspS 648070..649821 (-) 1752 WP_002812716.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13979.41 Da        Isoelectric Point: 9.5520

>NTDB_id=503028 KPF77_RS03255 WP_052774085.1 644954..645334(+) (dprB) [Campylobacter coli strain R19.0802]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYSVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=503028 KPF77_RS03255 WP_052774085.1 644954..645334(+) (dprB) [Campylobacter coli strain R19.0802]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATAGTGTGGCTAATACACGTAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

41.27

100

0.413