Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   B2K_RS19645 Genome accession   NC_017672
Coordinates   4613539..4613961 (-) Length   140 a.a.
NCBI ID   WP_014651381.1    Uniprot ID   I0BKV2
Organism   Paenibacillus mucilaginosus K02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4614931..4616382 4613539..4613961 flank 970


Gene organization within MGE regions


Location: 4613539..4616382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2K_RS19645 (B2K_20185) nucA/comI 4613539..4613961 (-) 423 WP_014651381.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  B2K_RS19650 (B2K_20190) - 4614027..4614482 (-) 456 WP_014651382.1 MarR family winged helix-turn-helix transcriptional regulator -
  B2K_RS37340 (B2K_20195) - 4614635..4614799 (+) 165 Protein_3919 SDR family NAD(P)-dependent oxidoreductase -
  B2K_RS19655 (B2K_39620) - 4614931..4616382 (-) 1452 WP_016362622.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15608.95 Da        Isoelectric Point: 4.5654

>NTDB_id=50286 B2K_RS19645 WP_014651381.1 4613539..4613961(-) (nucA/comI) [Paenibacillus mucilaginosus K02]
MKKRLIVQMLMILILVIVVFQVLGELDTQQPGGVDYTLILPADRYPETLKHIREAIAEGESAVCTIDREGAEENRKESLK
GIPTKKGYDRDEWPMAMCAEGGTGADVEYVPFADNRGAGSWIGNQLERFPDGSRILFQLP

Nucleotide


Download         Length: 423 bp        

>NTDB_id=50286 B2K_RS19645 WP_014651381.1 4613539..4613961(-) (nucA/comI) [Paenibacillus mucilaginosus K02]
ATGAAGAAGCGCTTGATCGTTCAGATGTTAATGATCCTCATCCTTGTTATTGTTGTCTTTCAAGTTCTAGGAGAGCTGGA
TACACAGCAGCCAGGCGGGGTCGATTATACGCTGATCCTGCCGGCGGATCGGTACCCCGAGACGCTGAAGCATATCCGGG
AGGCTATAGCCGAAGGGGAATCGGCCGTATGCACGATTGACCGGGAGGGAGCGGAGGAGAACCGCAAAGAATCGCTGAAA
GGCATTCCGACGAAAAAGGGCTACGACCGGGATGAGTGGCCTATGGCGATGTGTGCCGAGGGCGGCACCGGTGCGGATGT
AGAGTATGTGCCCTTCGCGGATAATCGGGGCGCAGGCTCGTGGATCGGCAATCAGCTCGAGCGGTTCCCGGACGGAAGCC
GGATTTTATTTCAATTGCCATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0BKV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.286

80

0.514

Multiple sequence alignment