Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   KPG50_RS06070 Genome accession   NZ_CP076504
Coordinates   1177444..1178403 (+) Length   319 a.a.
NCBI ID   WP_002876195.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R18.1301     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172444..1183403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPG50_RS06045 (KPG50_06045) - 1172793..1173815 (-) 1023 WP_002876190.1 hypothetical protein -
  KPG50_RS06050 (KPG50_06050) - 1173886..1174659 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  KPG50_RS06055 (KPG50_06055) wlaTB 1174652..1175608 (+) 957 WP_002860237.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  KPG50_RS06060 (KPG50_06060) wlaTC 1175605..1176564 (+) 960 WP_002876191.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  KPG50_RS06065 (KPG50_06065) - 1176567..1177385 (-) 819 WP_002876193.1 glycosyltransferase family 2 protein -
  KPG50_RS06070 (KPG50_06070) waaF 1177444..1178403 (+) 960 WP_002876195.1 lipopolysaccharide heptosyltransferase II Regulator
  KPG50_RS06075 (KPG50_06075) gmhA 1178384..1178944 (-) 561 WP_002876196.1 D-sedoheptulose 7-phosphate isomerase -
  KPG50_RS06080 (KPG50_06080) rfaE1 1178941..1180326 (-) 1386 WP_002910336.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  KPG50_RS06085 (KPG50_06085) rfaD 1180319..1181272 (-) 954 WP_002860242.1 ADP-glyceromanno-heptose 6-epimerase -
  KPG50_RS06090 (KPG50_06090) gmhB 1181273..1181834 (-) 562 Protein_1209 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  KPG50_RS06095 (KPG50_06095) - 1181915..1182217 (+) 303 WP_002852762.1 cytochrome c -
  KPG50_RS06100 (KPG50_06100) ccoS 1182240..1182446 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36607.08 Da        Isoelectric Point: 10.2870

>NTDB_id=502855 KPG50_RS06070 WP_002876195.1 1177444..1178403(+) (waaF) [Campylobacter jejuni strain R18.1301]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide


Download         Length: 960 bp        

>NTDB_id=502855 KPG50_RS06070 WP_002876195.1 1177444..1178403(+) (waaF) [Campylobacter jejuni strain R18.1301]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.025

99.687

0.937