Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KPF78_RS05840 Genome accession   NZ_CP076503
Coordinates   1138860..1139240 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain R19.0895     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133860..1144240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS05815 (KPF78_05815) aspS 1134373..1136124 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  KPF78_RS05820 (KPF78_05820) - 1136121..1136696 (+) 576 WP_002776379.1 adenylate kinase -
  KPF78_RS05825 (KPF78_05825) ppa 1136706..1137224 (+) 519 WP_002776378.1 inorganic diphosphatase -
  KPF78_RS05830 (KPF78_05830) msrA 1137272..1137772 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF78_RS05835 (KPF78_05835) - 1137995..1138849 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF78_RS05840 (KPF78_05840) dprB 1138860..1139240 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  KPF78_RS05845 (KPF78_05845) dprA 1139237..1140007 (-) 771 WP_004284970.1 DNA-processing protein DprA Machinery gene
  KPF78_RS05850 (KPF78_05850) - 1139997..1141028 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  KPF78_RS05855 (KPF78_05855) ilvC 1141031..1142053 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  KPF78_RS05860 (KPF78_05860) - 1142176..1144110 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=502819 KPF78_RS05840 WP_002776373.1 1138860..1139240(-) (dprB) [Campylobacter coli strain R19.0895]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=502819 KPF78_RS05840 WP_002776373.1 1138860..1139240(-) (dprB) [Campylobacter coli strain R19.0895]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421