Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   KPF78_RS03720 Genome accession   NZ_CP076503
Coordinates   729540..729845 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.0895     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 724540..734845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS03685 (KPF78_03685) - 724955..725716 (+) 762 WP_072212081.1 ATP-binding protein -
  KPF78_RS03690 (KPF78_03690) - 725713..726396 (+) 684 WP_002777124.1 3-methyladenine DNA glycosylase -
  KPF78_RS03695 (KPF78_03695) thiD 726396..727208 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KPF78_RS03700 (KPF78_03700) thiE 727198..727830 (+) 633 WP_002783359.1 thiamine phosphate synthase -
  KPF78_RS03705 (KPF78_03705) - 727808..728437 (+) 630 WP_060808047.1 uroporphyrinogen-III synthase -
  KPF78_RS03710 (KPF78_03710) - 728430..728882 (-) 453 WP_002777117.1 hypothetical protein -
  KPF78_RS03715 (KPF78_03715) - 728879..729547 (-) 669 WP_002780245.1 hypothetical protein -
  KPF78_RS03720 (KPF78_03720) ctsT 729540..729845 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  KPF78_RS03725 (KPF78_03725) proC 729842..730579 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  KPF78_RS03730 (KPF78_03730) fliW 730579..730968 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  KPF78_RS03735 (KPF78_03735) - 731132..731779 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  KPF78_RS03740 (KPF78_03740) lon 731795..734170 (+) 2376 WP_002783351.1 endopeptidase La -
  KPF78_RS03745 (KPF78_03745) rpsR 734226..734486 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=502810 KPF78_RS03720 WP_002790525.1 729540..729845(-) (ctsT) [Campylobacter coli strain R19.0895]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=502810 KPF78_RS03720 WP_002790525.1 729540..729845(-) (ctsT) [Campylobacter coli strain R19.0895]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475