Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   HWI41_RS01500 Genome accession   NZ_CP064536
Coordinates   351058..351723 (+) Length   221 a.a.
NCBI ID   WP_002496678.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG368     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 346058..356723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI41_RS01485 (HWI41_01450) - 347417..348961 (+) 1545 WP_049382921.1 NAD(P)H-binding protein -
  HWI41_RS01490 (HWI41_01455) - 349085..350554 (-) 1470 WP_002490478.1 alkaline phosphatase -
  HWI41_RS01495 (HWI41_01460) - 350851..351027 (+) 177 WP_002496677.1 hypothetical protein -
  HWI41_RS01500 (HWI41_01465) braR 351058..351723 (+) 666 WP_002496678.1 response regulator transcription factor Regulator
  HWI41_RS01505 (HWI41_01470) braS 351729..352625 (+) 897 WP_237618348.1 HAMP domain-containing sensor histidine kinase Regulator
  HWI41_RS01510 (HWI41_01475) - 352736..353485 (+) 750 WP_002490451.1 ABC transporter ATP-binding protein -
  HWI41_RS01515 (HWI41_01480) - 353487..355499 (+) 2013 WP_002497378.1 ABC transporter permease -
  HWI41_RS01520 (HWI41_01485) - 355603..356193 (+) 591 WP_408020483.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25671.78 Da        Isoelectric Point: 5.1924

>NTDB_id=502808 HWI41_RS01500 WP_002496678.1 351058..351723(+) (braR) [Staphylococcus epidermidis strain UMCG368]
MKIFIVEDDLVIAESLANELSKWNYEVHVIDNFERIMEDFRRVEPQLVLLDINLPTLNGFHWCQEIRKVSRVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=502808 HWI41_RS01500 WP_002496678.1 351058..351723(+) (braR) [Staphylococcus epidermidis strain UMCG368]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
TCATGTGATTGATAATTTTGAAAGGATAATGGAAGATTTTCGCAGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACCCTTAATGGCTTCCATTGGTGCCAAGAAATACGAAAAGTATCTCGTGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATTCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCGAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAATGTTGGGAGTCTGAGAATTTTATTGA
TGACAATACGCTAGCAGTAAATATGACGCGATTACGAAAAAAATTACTTTCTATCGGTGTCGATAATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.733

100

0.787