Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KPF78_RS03115 Genome accession   NZ_CP076503
Coordinates   611521..612861 (+) Length   446 a.a.
NCBI ID   WP_002777369.1    Uniprot ID   A0ABN0EPA8
Organism   Campylobacter coli strain R19.0895     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 606521..617861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS03085 (KPF78_03085) - 606916..607473 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  KPF78_RS03090 (KPF78_03090) pilA 607473..608339 (+) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  KPF78_RS03095 (KPF78_03095) - 608336..609280 (-) 945 WP_002777375.1 GTP-binding protein -
  KPF78_RS03100 (KPF78_03100) - 609273..609608 (-) 336 WP_002777373.1 hypothetical protein -
  KPF78_RS03105 (KPF78_03105) - 609650..610531 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  KPF78_RS03110 (KPF78_03110) - 610534..611385 (-) 852 WP_002784379.1 carbon-nitrogen hydrolase family protein -
  KPF78_RS03115 (KPF78_03115) radA/sms 611521..612861 (+) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  KPF78_RS03120 (KPF78_03120) - 613012..613692 (+) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  KPF78_RS03125 (KPF78_03125) - 613689..613889 (+) 201 WP_002777366.1 hypothetical protein -
  KPF78_RS03130 (KPF78_03130) metF 613899..614747 (-) 849 WP_057040107.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  KPF78_RS03135 (KPF78_03135) metE 614757..617021 (-) 2265 WP_060808038.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  KPF78_RS03140 (KPF78_03140) - 617044..617814 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49120.03 Da        Isoelectric Point: 6.9145

>NTDB_id=502804 KPF78_RS03115 WP_002777369.1 611521..612861(+) (radA/sms) [Campylobacter coli strain R19.0895]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=502804 KPF78_RS03115 WP_002777369.1 611521..612861(+) (radA/sms) [Campylobacter coli strain R19.0895]
ATGGCTAAAAATAAAATTCTTTTTGAATGCCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGTGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAATAAAATTGCTTCAGCGGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.37

96.861

0.439
  radA Streptococcus pneumoniae Rx1

44.47

97.309

0.433
  radA Streptococcus pneumoniae D39

44.47

97.309

0.433
  radA Streptococcus pneumoniae R6

44.47

97.309

0.433
  radA Streptococcus pneumoniae TIGR4

44.47

97.309

0.433
  radA Streptococcus mitis SK321

44.444

96.861

0.43
  radA Streptococcus mitis NCTC 12261

44.444

96.861

0.43