Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   KPF78_RS01520 Genome accession   NZ_CP076503
Coordinates   309828..310424 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain R19.0895     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304828..315424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS01505 (KPF78_01505) ctsR 307535..307846 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  KPF78_RS01510 (KPF78_01510) ctsD 307824..309242 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF78_RS01515 (KPF78_01515) ctsP 309235..309831 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  KPF78_RS01520 (KPF78_01520) ctsX 309828..310424 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  KPF78_RS01525 (KPF78_01525) ctsE 310417..311979 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  KPF78_RS01530 (KPF78_01530) ctsF 311966..313141 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  KPF78_RS01535 (KPF78_01535) - 313138..313518 (-) 381 Protein_296 TSUP family transporter -
  KPF78_RS01540 (KPF78_01540) - 314030..314659 (+) 630 WP_139848212.1 S24 family peptidase -
  KPF78_RS01545 (KPF78_01545) - 314740..315060 (+) 321 WP_002784647.1 hypothetical protein -
  KPF78_RS01550 (KPF78_01550) - 315070..315264 (+) 195 WP_002784648.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=502789 KPF78_RS01520 WP_002779313.1 309828..310424(+) (ctsX) [Campylobacter coli strain R19.0895]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=502789 KPF78_RS01520 WP_002779313.1 309828..310424(+) (ctsX) [Campylobacter coli strain R19.0895]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434