Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KN807_RS17515 Genome accession   NZ_CP076470
Coordinates   3660241..3661668 (-) Length   475 a.a.
NCBI ID   WP_077775097.1    Uniprot ID   -
Organism   Escherichia coli strain DH5a     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3655241..3666668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KN807_RS17485 (KN807_17435) yeeZ 3655296..3656120 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KN807_RS17490 (KN807_17440) yeeY 3656166..3657095 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KN807_RS17495 (KN807_17445) yoeI 3657310..3657372 (+) 63 WP_010723108.1 membrane protein YoeI -
  KN807_RS17500 (KN807_17450) plaP 3657362..3658720 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KN807_RS17505 (KN807_17455) tsuA 3658899..3659957 (+) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  KN807_RS17510 (KN807_17460) tsuB 3659971..3660198 (+) 228 WP_046613325.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KN807_RS17515 (KN807_17465) sbcB 3660241..3661668 (-) 1428 WP_077775097.1 exodeoxyribonuclease I Machinery gene
  KN807_RS17520 (KN807_17470) dacD 3661877..3663043 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KN807_RS17525 (KN807_17475) sbmC 3663162..3663635 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KN807_RS17530 (KN807_17480) yeeA 3663833..3664891 (+) 1059 WP_046613327.1 FUSC family protein -
  KN807_RS17535 (KN807_17485) tmaR 3665063..3665392 (+) 330 WP_000450409.1 DUF496 family protein -
  KN807_RS17540 (KN807_17490) - 3665493..3665675 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KN807_RS17545 (KN807_17495) - 3665747..3665875 (+) 129 Protein_3425 transposase domain-containing protein -
  KN807_RS17550 (KN807_17500) - 3666164..3666244 (-) 81 Protein_3426 hypothetical protein -
  KN807_RS17555 (KN807_17505) yeeW 3666290..3666484 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54490.78 Da        Isoelectric Point: 5.4700

>NTDB_id=502771 KN807_RS17515 WP_077775097.1 3660241..3661668(-) (sbcB) [Escherichia coli strain DH5a]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLSALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=502771 KN807_RS17515 WP_077775097.1 3660241..3661668(-) (sbcB) [Escherichia coli strain DH5a]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTATCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585