Detailed information NTG0502758

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KN807_RS13870
• Genome accession: NZ_CP076470
• Coordinates: 2883554..2884546 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli strain DH5a
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2878554..2889546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KN807_RS13840 (KN807_13790)	ispD	2878615..2879325 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KN807_RS13845 (KN807_13795)	ispF	2879325..2879804 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KN807_RS13850 (KN807_13800)	truD	2879801..2880850 (+)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
KN807_RS13855 (KN807_13805)	surE	2880831..2881592 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KN807_RS13860 (KN807_13810)	pcm	2881586..2882212 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KN807_RS13865 (KN807_13815)	nlpD	2882397..2883491 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KN807_RS13870 (KN807_13820)	rpoS	2883554..2884546 (+)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
KN807_RS13875 (KN807_13825)	ygbN	2884640..2886004 (-)	1365	WP_000104441.1	GntP family transporter	-
KN807_RS13880 (KN807_13830)	ygbM	2886093..2886869 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KN807_RS13885 (KN807_13835)	ygbL	2886874..2887512 (-)	639	WP_001278994.1	aldolase	-
KN807_RS13890 (KN807_13840)	otnK	2887604..2888770 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=502758 KN807_RS13870 WP_000081586.1 2883554..2884546(+) (rpoS) [Escherichia coli strain DH5a]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=502758 KN807_RS13870 WP_000081586.1 2883554..2884546(+) (rpoS) [Escherichia coli strain DH5a]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715