Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KME66_RS05970 Genome accession   NZ_CP076457
Coordinates   1369246..1370316 (-) Length   356 a.a.
NCBI ID   WP_216329106.1    Uniprot ID   -
Organism   Streptomyces sp. YPW6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364246..1375316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME66_RS05955 (KME66_05955) - 1364486..1365544 (-) 1059 WP_216319788.1 vWA domain-containing protein -
  KME66_RS05960 (KME66_05960) - 1365682..1367943 (-) 2262 WP_253208566.1 M9 family metallopeptidase -
  KME66_RS05965 (KME66_05965) amiE 1368215..1369249 (-) 1035 WP_253208241.1 ABC transporter ATP-binding protein Regulator
  KME66_RS05970 (KME66_05970) amiE 1369246..1370316 (-) 1071 WP_216329106.1 ABC transporter ATP-binding protein Regulator
  KME66_RS05975 (KME66_05975) - 1370337..1371323 (-) 987 WP_216319791.1 ABC transporter permease -
  KME66_RS05980 (KME66_05980) - 1371320..1372291 (-) 972 WP_216319794.1 ABC transporter permease -
  KME66_RS05985 (KME66_05985) - 1372312..1373958 (-) 1647 WP_216319797.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37616.08 Da        Isoelectric Point: 8.1089

>NTDB_id=502640 KME66_RS05970 WP_216329106.1 1369246..1370316(-) (amiE) [Streptomyces sp. YPW6]
MPPGSSTAPDHPLLRVEDLRVAFDTPAGAVQAVDGVSFTVAAGRTLGLVGESGSGKSVTSLAVMGLHRRARVSGSVTLAG
QELIGLTDRRLGRLRGRRMAMVFQDPLSALHPAYTVGEQIAEAHRHHFGSARRVARRRAVEMLGEVGIPEPARRAGEYPH
QFSGGMRQRAVIAMALSCEPDLLVADEPTTALDVTVQAQILELIARLQQDRRLGVLMITHDLGVVARVAHEVLVMYGGRA
AEQAPVDALFESPAHPYTRGLLDSLPRLDDPDDAPLRAIPGSPPSPAEPRTGCPFVPRCPRAAAATAPERARCAGESPRP
RGVPGDGRLVACHLPLPAAPHPGPPGGAPVPPEEAR

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=502640 KME66_RS05970 WP_216329106.1 1369246..1370316(-) (amiE) [Streptomyces sp. YPW6]
GTGCCGCCCGGCTCCAGCACCGCGCCGGACCACCCCCTGCTGCGCGTCGAGGACCTGCGGGTCGCCTTCGACACCCCGGC
CGGAGCCGTCCAGGCCGTCGACGGGGTCTCCTTCACCGTGGCGGCCGGCCGCACCCTGGGGCTGGTCGGCGAGTCCGGCT
CCGGCAAGTCGGTCACCTCCCTCGCCGTGATGGGCCTGCACCGCCGGGCCCGGGTGAGCGGATCGGTCACCCTCGCCGGA
CAGGAACTCATCGGCCTGACCGACCGCCGGCTCGGCCGGCTGCGCGGACGCCGGATGGCGATGGTCTTCCAGGACCCGCT
GTCCGCGCTGCATCCCGCGTACACGGTCGGCGAACAGATCGCGGAGGCCCACCGCCACCACTTCGGCAGTGCCCGGCGCG
TCGCCCGCAGACGGGCCGTGGAGATGCTCGGCGAGGTCGGCATCCCCGAACCGGCCCGCCGGGCGGGGGAGTACCCGCAC
CAGTTCTCCGGGGGCATGCGGCAGCGCGCCGTGATCGCCATGGCACTGTCCTGCGAACCCGACCTGCTCGTCGCCGACGA
ACCGACCACCGCGCTCGACGTCACCGTCCAGGCCCAGATCCTCGAACTGATCGCCCGCCTCCAGCAGGACCGCCGACTGG
GCGTCCTGATGATCACTCACGATCTGGGGGTGGTGGCGCGCGTCGCCCACGAGGTGCTCGTCATGTACGGCGGACGTGCC
GCCGAACAGGCCCCGGTGGACGCGTTGTTCGAGAGCCCCGCCCACCCCTACACCCGCGGCCTCCTGGACTCGCTGCCCCG
CCTGGACGACCCCGACGACGCACCCCTGCGCGCCATCCCGGGCTCCCCGCCGTCACCGGCCGAGCCGCGGACCGGCTGCC
CCTTCGTCCCGCGCTGCCCCCGGGCCGCCGCCGCCACCGCCCCGGAGCGGGCCCGTTGCGCGGGGGAGAGCCCCCGGCCC
CGGGGCGTACCCGGCGACGGCCGGCTGGTCGCCTGCCACCTGCCCCTGCCGGCCGCCCCGCACCCCGGTCCGCCCGGCGG
CGCCCCCGTACCGCCCGAGGAGGCCCGATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(242-303)

ABC transporter (ABC_tran)

(34-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

45.455

86.517

0.393
  amiE Streptococcus thermophilus LMG 18311

44.805

86.517

0.388
  amiE Streptococcus thermophilus LMD-9

44.805

86.517

0.388
  oppD Streptococcus mutans UA159

47.079

81.742

0.385